[package - main-amd64-default][biology/bifrost] Failed for bifrost-1.3.5 in build
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Date: Tue, 05 Nov 2024 20:15:04 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p56a5011a0f1d_s4026b17bac6/logs/bifrost-1.3.5.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p56a5011a0f1d_s4026b17bac6
Log:
=>> Building biology/bifrost
build started at Tue Nov 5 20:14:48 UTC 2024
port directory: /usr/ports/biology/bifrost
package name: bifrost-1.3.5
building for: FreeBSD main-amd64-default-job-06 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 amd64
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 512 Mar 21 2024 /usr/ports/biology/bifrost/Makefile
Ports top last git commit: 56a5011a0f1
Ports top unclean checkout: no
Port dir last git commit: 719334cd852
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500026
Job Id: 06
!!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500026
UNAME_v=FreeBSD 15.0-CURRENT 1500026
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-amd64-default/06/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/bifrost/work/.cache HOME=/wrkdirs/usr/ports/biology/bifrost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bifrost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/bifrost/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/bifrost/work/.cache HOME=/wrkdirs/usr/ports/biology/bifrost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bifrost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/bifrost/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/bifrost/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0
644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bifrost" EXAMPLESDIR="share/examples/bifrost" DATADIR="share/bifrost" WWWDIR="www/bifrost" ETCDIR="etc/bifrost"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bifrost DOCSDIR=/usr/local/share/doc/bifrost EXAMPLESDIR=/usr/local/share/examples/bifrost WWWDIR=/usr/local/www/bifrost ETCDIR=/usr/local/etc/bifrost
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> bifrost-1.3.5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-amd64-default-job-06] Installing pkg-1.21.3...
[main-amd64-default-job-06] Extracting pkg-1.21.3: .......... done
===> bifrost-1.3.5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of bifrost-1.3.5
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by bifrost-1.3.5 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by bifrost-1.3.5 for building
=> SHA256 Checksum OK for pmelsted-bifrost-v1.3.5_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by bifrost-1.3.5 for building
===> Extracting for bifrost-1.3.5
=> SHA256 Checksum OK for pmelsted-bifrost-v1.3.5_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for bifrost-1.3.5
===> Applying FreeBSD patches for bifrost-1.3.5 from /usr/ports/biology/bifrost/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> bifrost-1.3.5 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.30.5.pkg
[main-amd64-default-job-06] Installing cmake-core-3.30.5...
[main-amd64-default-job-06] `-- Installing expat-2.6.3...
[main-amd64-default-job-06] `-- Extracting expat-2.6.3: .......... done
[main-amd64-default-job-06] `-- Installing jsoncpp-1.9.6_1...
[main-amd64-default-job-06] `-- Extracting jsoncpp-1.9.6_1: .......... done
[main-amd64-default-job-06] `-- Installing libuv-1.49.2...
<snip>
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1274:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1274 | unitig = new Unitig<U>(move(cs), move(cc));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1198:12: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
1198 | return readBinaryGraph(in);
| ^
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:382:31: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here
382 | p_readSuccess_checksum = readBinaryGraph(input_graph_fn);
| ^
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:687:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here
687 | else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose);
| ^
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:1:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:902:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1274:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1274 | unitig = new Unitig<U>(move(cs), move(cc));
| ^
| std::
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:2:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.hpp:516:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:2783:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
2783 | buffer_seq.push_back(move(s));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:2754:24: note: while substituting into a lambda expression here
2754 | [&]{
| ^
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:1600:28: note: in instantiation of member function 'ColoredCDBG<>::search' requested here
1600 | const bool ret = this->search(query_filenames, out, found_km_ratio_out, inexact_search, files_as_queries, nb_threads, verbose);
| ^
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:731:45: note: in instantiation of member function 'ColoredCDBG<>::search' requested here
731 | success = ccdbg.search( opt.filename_query_in, opt.prefixFilenameOut, opt.get_ratio_found_km,
| ^
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:2:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.hpp:516:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:2155:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
2155 | buffer_seq.push_back(move(s));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:2126:24: note: while substituting into a lambda expression here
2126 | [&]{
| ^
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:1613:12: note: in instantiation of member function 'ColoredCDBG<>::searchMinRatioKmer_' requested here
1613 | return searchMinRatioKmer_( query_filenames, out, min_ratio_kmers, 0,
| ^
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:1526:28: note: in instantiation of member function 'ColoredCDBG<>::searchMinRatioKmer' requested here
1526 | const bool ret = this->searchMinRatioKmer(query_filenames, out, min_ratio_kmers, inexact_search, files_as_queries, nb_threads, verbose);
| ^
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:736:45: note: in instantiation of member function 'ColoredCDBG<>::searchMinRatioKmer' requested here
736 | success = ccdbg.searchMinRatioKmer( opt.filename_query_in, opt.prefixFilenameOut, opt.min_ratio_kmers_search,
| ^
67 warnings and 1 error generated.
[ 15% 6/32] /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:33:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerCovIndex.hpp:163:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
85 | v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov);
| ^
| std::
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:36:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerStream.hpp:18:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
507 | v = move(v_tmp);
| ^
| std::
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:36:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerStream.hpp:535:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
535 | ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)), sc_km(move(o.sc_km)) {}
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerStream.hpp:535:109: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
535 | ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)), sc_km(move(o.sc_km)) {}
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerStream.hpp:1087:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1087 | rsh = move(rqh);
| ^
| std::
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:42:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:7:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
169 | CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
182 | CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {}
| ^
| std::
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:42:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
28 | Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
28 | Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
87 | Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
87 | Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {}
| ^
| std::
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:900:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:27:78: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
27 | hmap_min_unitigs(move(o.hmap_min_unitigs)){
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:128:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
128 | h_kmers_ccov.insert(move(km), move(it_s->ccov));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:128:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
128 | h_kmers_ccov.insert(move(km), move(it_s->ccov));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:3008:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
3008 | return pair<vector<CompressedSequence>, vector<Kmer>>(move(v_approx_cs), move(v_approx_km));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:3008:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
3008 | return pair<vector<CompressedSequence>, vector<Kmer>>(move(v_approx_cs), move(v_approx_km));
| ^
| std::
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6:
In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:902:
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1274:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1274 | unitig = new Unitig<U>(move(cs), move(cc));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1274:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1274 | unitig = new Unitig<U>(move(cs), move(cc));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:2008:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
2008 | unitig = new Unitig<U>(move(cs), move(cc));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:2008:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
2008 | unitig = new Unitig<U>(move(cs), move(cc));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:2119:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
2119 | unitig = new Unitig<U>(move(cs), move(cc));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:2119:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
2119 | unitig = new Unitig<U>(move(cs), move(cc));
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:724:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
724 | *this = move(new_uc);
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:774:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
774 | *this = move(new_uc);
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:1100:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1100 | uc[0] = move(full_uc);
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:1101:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1101 | uc[1] = move(non_full_uc);
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:1124:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1124 | uc[0] = move(full_uc);
| ^
| std::
/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:1125:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
1125 | uc[1] = move(non_full_uc);
| ^
| std::
28 warnings generated.
[ 18% 6/32] /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompressedSequence.cpp
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/biology/bifrost