From nobody Tue Nov 05 20:15:04 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4XjfhS2K8Kz5bY0X for ; Tue, 05 Nov 2024 20:15:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R10" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4XjfhS0dd1z4VPp for ; Tue, 5 Nov 2024 20:15:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1730837704; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=JHHHc74W4FThILS9JQw8hv/lYYRj6DIxf+/IEW5Da+A=; b=xD0R2NrydmYU46WORdC7rO9ivyDo6p/IeMj9WBUUi6FDSRiahVCEmh+53yEbKi6fSB+6ol tQabMObRwkcTXHwnGK2RTvehFCI/x+2huMjmFozUAg32VbHUZ29ajygJ6ZiCFmEu0ZCW53 IMq19kS3w8OqftZ5m/xIexcq5yiacjg8/gUxUXL13fB7IAY4MLwGY2gr5IeOyv5qPs2AH4 krYhfg/0j8g9bGkE45vUlUKPBTwFztsWWrf+wRk9AoaBfnrGWM/9spiTvPssDhVarvxyA0 D8b69DskUtI4bxVWreVLxTP3fz5HwjguawPoHVlvuYJfuG5qdiMj/xMeYN9HJg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1730837704; a=rsa-sha256; cv=none; b=IrwDBbhEMFGyLNTyULRzLdNcAiyBboaqDFpSg48bGch9WYXT+GqDKAp2tDRH1E5XbsZcNx 3GKTgp0dL5djnkeCizQEFNyVPQd2mAXKRZ5sweL1fPQ6NwAa3nH6PvOuMdZsDIWxnEmhOb a1zoA0tLOs34i05jdvr/dliLbIZdC6OUsFaQJt6akduy4Czf6mwh7k21b+94mfCP607q9e y1U97N3Gd+pL0PPOqvjfklG2YmPSMQXqSE3zKxR28ifWrOcvt0sfmsv+9Q1qrc1mfRLas1 NKFQy2ujlRH61+dmTM/DiP8qKCS07bbpOKnwb0yu9BgHXkF3slQOehciPITb/w== Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4XjfhS04C0zXKD for ; Tue, 5 Nov 2024 20:15:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 66f5 by beefy18.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy18.nyi.freebsd.org); Tue, 05 Nov 2024 20:15:04 +0000 To: jwb@FreeBSD.org Subject: [package - main-amd64-default][biology/bifrost] Failed for bifrost-1.3.5 in build Cc: pkg-fallout@FreeBSD.org Date: Tue, 05 Nov 2024 20:15:04 +0000 Message-Id: <672a7cc8.66f5.36ec1228@beefy18.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p56a5011a0f1d_s4026b17bac6/logs/bifrost-1.3.5.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p56a5011a0f1d_s4026b17bac6 Log: =>> Building biology/bifrost build started at Tue Nov 5 20:14:48 UTC 2024 port directory: /usr/ports/biology/bifrost package name: bifrost-1.3.5 building for: FreeBSD main-amd64-default-job-06 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 512 Mar 21 2024 /usr/ports/biology/bifrost/Makefile Ports top last git commit: 56a5011a0f1 Ports top unclean checkout: no Port dir last git commit: 719334cd852 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500023 Jail OSVERSION: 1500026 Job Id: 06 !!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500026 UNAME_v=FreeBSD 15.0-CURRENT 1500026 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-amd64-default/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/bifrost/work/.cache HOME=/wrkdirs/usr/ports/biology/bifrost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bifrost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/bifrost/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bifrost/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/bifrost/work/.cache HOME=/wrkdirs/usr/ports/biology/bifrost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bifrost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/bifrost/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/bifrost/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0 644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bifrost" EXAMPLESDIR="share/examples/bifrost" DATADIR="share/bifrost" WWWDIR="www/bifrost" ETCDIR="etc/bifrost" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bifrost DOCSDIR=/usr/local/share/doc/bifrost EXAMPLESDIR=/usr/local/share/examples/bifrost WWWDIR=/usr/local/www/bifrost ETCDIR=/usr/local/etc/bifrost --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- ulimit: can't get limit: Invalid argument cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> bifrost-1.3.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [main-amd64-default-job-06] Installing pkg-1.21.3... [main-amd64-default-job-06] Extracting pkg-1.21.3: .......... done ===> bifrost-1.3.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of bifrost-1.3.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by bifrost-1.3.5 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by bifrost-1.3.5 for building => SHA256 Checksum OK for pmelsted-bifrost-v1.3.5_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD2CLAUSE accepted by the user ===> Fetching all distfiles required by bifrost-1.3.5 for building ===> Extracting for bifrost-1.3.5 => SHA256 Checksum OK for pmelsted-bifrost-v1.3.5_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for bifrost-1.3.5 ===> Applying FreeBSD patches for bifrost-1.3.5 from /usr/ports/biology/bifrost/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> bifrost-1.3.5 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.30.5.pkg [main-amd64-default-job-06] Installing cmake-core-3.30.5... [main-amd64-default-job-06] `-- Installing expat-2.6.3... [main-amd64-default-job-06] `-- Extracting expat-2.6.3: .......... done [main-amd64-default-job-06] `-- Installing jsoncpp-1.9.6_1... [main-amd64-default-job-06] `-- Extracting jsoncpp-1.9.6_1: .......... done [main-amd64-default-job-06] `-- Installing libuv-1.49.2... /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1274:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1274 | unitig = new Unitig(move(cs), move(cc)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1198:12: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here 1198 | return readBinaryGraph(in); | ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:382:31: note: in instantiation of member function 'CompactedDBG<>::readBinaryGraph' requested here 382 | p_readSuccess_checksum = readBinaryGraph(input_graph_fn); | ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:687:42: note: in instantiation of member function 'CompactedDBG<>::read' requested here 687 | else success = cdbg1.read(lopt.filename_graph_in, lopt.filename_index_in, lopt.nb_threads, lopt.verbose); | ^ In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:1: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:902: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1274:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1274 | unitig = new Unitig(move(cs), move(cc)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:2: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.hpp:516: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:2783:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 2783 | buffer_seq.push_back(move(s)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:2754:24: note: while substituting into a lambda expression here 2754 | [&]{ | ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:1600:28: note: in instantiation of member function 'ColoredCDBG<>::search' requested here 1600 | const bool ret = this->search(query_filenames, out, found_km_ratio_out, inexact_search, files_as_queries, nb_threads, verbose); | ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:731:45: note: in instantiation of member function 'ColoredCDBG<>::search' requested here 731 | success = ccdbg.search( opt.filename_query_in, opt.prefixFilenameOut, opt.get_ratio_found_km, | ^ In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:2: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.hpp:516: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:2155:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 2155 | buffer_seq.push_back(move(s)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:2126:24: note: while substituting into a lambda expression here 2126 | [&]{ | ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:1613:12: note: in instantiation of member function 'ColoredCDBG<>::searchMinRatioKmer_' requested here 1613 | return searchMinRatioKmer_( query_filenames, out, min_ratio_kmers, 0, | ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColoredCDBG.tcc:1526:28: note: in instantiation of member function 'ColoredCDBG<>::searchMinRatioKmer' requested here 1526 | const bool ret = this->searchMinRatioKmer(query_filenames, out, min_ratio_kmers, inexact_search, files_as_queries, nb_threads, verbose); | ^ /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Bifrost.cpp:736:45: note: in instantiation of member function 'ColoredCDBG<>::searchMinRatioKmer' requested here 736 | success = ccdbg.searchMinRatioKmer( opt.filename_query_in, opt.prefixFilenameOut, opt.min_ratio_kmers_search, | ^ 67 warnings and 1 error generated. [ 15% 6/32] /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:33: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerCovIndex.hpp:163: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerCovIndex.tcc:85:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 85 | v_blocks[i]->bc_cov = move(o.v_blocks[i]->bc_cov); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:36: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerStream.hpp:18: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/minHashIterator.hpp:507:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 507 | v = move(v_tmp); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:36: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerStream.hpp:535:86: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 535 | ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)), sc_km(move(o.sc_km)) {} | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerStream.hpp:535:109: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 535 | ReadHasherMinimizer(ReadQualityHasherMinimizer&& o) : k(o.k), g(o.g), sc_min(move(o.sc_min)), sc_km(move(o.sc_km)) {} | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/KmerStream.hpp:1087:23: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1087 | rsh = move(rqh); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:42: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:7: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompressedCoverage.hpp:169:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 169 | CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {} | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompressedCoverage.hpp:182:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 182 | CompressedCoverage_t(CompressedCoverage&& c) : ccov(move(c)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:42: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:28:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 28 | Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {} | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:28:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 28 | Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {} | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:87:70: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 87 | Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {} | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/Unitig.hpp:87:84: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 87 | Unitig(CompressedSequence&& s, CompressedCoverage&& c) : seq(move(s)), cov(move(c)) {} | ^ | std:: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:900: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:27:78: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 27 | hmap_min_unitigs(move(o.hmap_min_unitigs)){ | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:128:29: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 128 | h_kmers_ccov.insert(move(km), move(it_s->ccov)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:128:39: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 128 | h_kmers_ccov.insert(move(km), move(it_s->ccov)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:3008:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 3008 | return pair, vector>(move(v_approx_cs), move(v_approx_km)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.tcc:3008:82: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 3008 | return pair, vector>(move(v_approx_cs), move(v_approx_km)); | ^ | std:: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:5: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.hpp:6: In file included from /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompactedDBG.hpp:902: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1274:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1274 | unitig = new Unitig(move(cs), move(cc)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:1274:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1274 | unitig = new Unitig(move(cs), move(cc)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:2008:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 2008 | unitig = new Unitig(move(cs), move(cc)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:2008:50: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 2008 | unitig = new Unitig(move(cs), move(cc)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:2119:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 2119 | unitig = new Unitig(move(cs), move(cc)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/IO.tcc:2119:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 2119 | unitig = new Unitig(move(cs), move(cc)); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:724:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 724 | *this = move(new_uc); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:774:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 774 | *this = move(new_uc); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:1100:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1100 | uc[0] = move(full_uc); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:1101:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1101 | uc[1] = move(non_full_uc); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:1124:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1124 | uc[0] = move(full_uc); | ^ | std:: /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/ColorSet.cpp:1125:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 1125 | uc[1] = move(non_full_uc); | ^ | std:: 28 warnings generated. [ 18% 6/32] /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /wrkdirs/usr/ports/biology/bifrost/work/bifrost-1.3.5/src/CompressedSequence.cpp ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped making "build" in /usr/ports/biology/bifrost