[package - main-amd64-default][biology/viennarna] Failed for viennarna-2.7.0 in build
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Date: Sat, 02 Nov 2024 05:25:27 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p009a7c198ee2_s8d6feaaaa26/logs/viennarna-2.7.0.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p009a7c198ee2_s8d6feaaaa26
Log:
=>> Building biology/viennarna
build started at Sat Nov 2 05:21:51 UTC 2024
port directory: /usr/ports/biology/viennarna
package name: viennarna-2.7.0
building for: FreeBSD main-amd64-default-job-07 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1908 Nov 2 01:01 /usr/ports/biology/viennarna/Makefile
Ports top last git commit: 009a7c198ee
Ports top unclean checkout: no
Port dir last git commit: c7623ae9b3f
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500023
Jail OSVERSION: 1500026
Job Id: 07
!!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500026
UNAME_v=FreeBSD 15.0-CURRENT 1500026
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
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OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
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POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for viennarna-2.7.0:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/viennarna/work/.cache HOME=/wrkdirs/usr/ports/biology/viennarna/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/viennarna/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/viennarna/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/usr/local/bin/bash CONFIG_SHELL=/usr/local/bin/bash ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local
/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DEFAULT_AUTOCONF=2.72 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/viennarna/work/.cache HOME=/wrkdirs/usr/ports/biology/viennarna/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/viennarna/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/viennarna/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr
/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DEFAULT_AUTOCONF=2.72 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Dregister= -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ViennaRNA" EXAMPLESDIR="share/examples/ViennaRNA" DATADIR="share/viennarna" WWWDIR="www/viennarna" ETCDIR="etc/viennarna"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/viennarna DOCSDIR=/usr/local/share/doc/ViennaRNA EXAMPLESDIR=/usr/local/share/examples/ViennaRNA WWWDIR=/usr/local/www/viennarna ETCDIR=/usr/local/etc/viennarna
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
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USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
ulimit: can't get limit: Invalid argument
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License ViennaRNALicense accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> viennarna-2.7.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-amd64-default-job-07] Installing pkg-1.21.3...
[main-amd64-default-job-07] Extracting pkg-1.21.3: .......... done
===> viennarna-2.7.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of viennarna-2.7.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License ViennaRNALicense accepted by the user
=> ViennaRNA-2.7.0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_7_x/ViennaRNA-2.7.0.tar.gz
ViennaRNA-2.7.0.tar.gz 50 MB 13 MBps 04s
===> Fetching all distfiles required by viennarna-2.7.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License ViennaRNALicense accepted by the user
===> Fetching all distfiles required by viennarna-2.7.0 for building
=> SHA256 Checksum OK for ViennaRNA-2.7.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License ViennaRNALicense accepted by the user
===> Fetching all distfiles required by viennarna-2.7.0 for building
===> Extracting for viennarna-2.7.0
=> SHA256 Checksum OK for ViennaRNA-2.7.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for viennarna-2.7.0
===> Applying FreeBSD patches for viennarna-2.7.0 from /usr/ports/biology/viennarna/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> viennarna-2.7.0 depends on executable: bash - not found
<snip>
| ^
../dlib-19.24/dlib/all/../bigint/../unicode/unicode.h:509:18: note: in instantiation of member function 'std::basic_string<unsigned int>::push_back' requested here
509 | temp.push_back(ch);
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2912:3: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2912 | traits_type::assign(*++__p, value_type());
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2535:5: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2535 | traits_type::copy(std::__to_address(__p), std::__to_address(__old_p), __n_copy);
| ^
/usr/include/c++/v1/string:2556:3: note: in instantiation of member function 'std::basic_string<unsigned int>::__grow_by' requested here
2556 | __grow_by(__old_cap, __delta_cap, __old_sz, __n_copy, __n_del, __n_add);
| ^
/usr/include/c++/v1/string:2898:5: note: in instantiation of member function 'std::basic_string<unsigned int>::__grow_by_without_replace' requested here
2898 | __grow_by_without_replace(__cap, 1, __sz, __sz, 0);
| ^
../dlib-19.24/dlib/all/../bigint/../unicode/unicode.h:509:18: note: in instantiation of member function 'std::basic_string<unsigned int>::push_back' requested here
509 | temp.push_back(ch);
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2538:5: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2538 | traits_type::copy(
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2861:5: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2861 | traits_type::assign(std::__to_address(__p) + __sz, __n, __c);
| ^
/usr/include/c++/v1/string:3302:5: note: in instantiation of member function 'std::basic_string<unsigned int>::append' requested here
3302 | append(__n - __sz, __c);
| ^
/usr/include/c++/v1/string:1303:84: note: in instantiation of member function 'std::basic_string<unsigned int>::resize' requested here
1303 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX20 void resize(size_type __n) { resize(__n, value_type()); }
| ^
../dlib-19.24/dlib/all/../bigint/../serialize.h:2011:14: note: in instantiation of member function 'std::basic_string<unsigned int>::resize' requested here
2011 | item.resize(size);
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2864:5: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2864 | traits_type::assign(__p[__sz], value_type());
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2221:5: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2221 | traits_type::assign(__p[__newsz], value_type());
| ^
/usr/include/c++/v1/string:2134:5: note: in instantiation of member function 'std::basic_string<unsigned int>::__null_terminate_at' requested here
2134 | __null_terminate_at(std::__to_address(__get_pointer()), __pos);
| ^
/usr/include/c++/v1/string:3304:5: note: in instantiation of member function 'std::basic_string<unsigned int>::__erase_to_end' requested here
3304 | __erase_to_end(__n);
| ^
/usr/include/c++/v1/string:1303:84: note: in instantiation of member function 'std::basic_string<unsigned int>::resize' requested here
1303 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX20 void resize(size_type __n) { resize(__n, value_type()); }
| ^
../dlib-19.24/dlib/all/../bigint/../serialize.h:2011:14: note: in instantiation of member function 'std::basic_string<unsigned int>::resize' requested here
2011 | item.resize(size);
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2825:29: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s))
| ^
../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string<unsigned int>::assign' requested here
54 | dest.assign((const unichar *)(src));
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2825:77: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s))
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2826:80: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2826 | : __assign_external(__s, traits_type::length(__s)))
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2208:5: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2208 | traits_type::move(std::__to_address(__p), __s, __n);
| ^
/usr/include/c++/v1/string:2825:57: note: in instantiation of member function 'std::basic_string<unsigned int>::__assign_short' requested here
2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s))
| ^
../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string<unsigned int>::assign' requested here
54 | dest.assign((const unichar *)(src));
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2209:5: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2209 | traits_type::assign(__p[__n], value_type());
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:11:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6:
In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6:
In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97:
/usr/include/c++/v1/string:2817:33: error: implicit instantiation of undefined template 'std::char_traits<unsigned int>'
2817 | return __assign_external(__s, traits_type::length(__s));
| ^
/usr/include/c++/v1/string:2827:14: note: in instantiation of member function 'std::basic_string<unsigned int>::__assign_external' requested here
2827 | : __assign_external(__s);
| ^
../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string<unsigned int>::assign' requested here
54 | dest.assign((const unichar *)(src));
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from ../dlib-19.24/dlib/all/source.cpp:82:
In file included from ../dlib-19.24/dlib/all/../cuda/cpu_dlib.cpp:8:
In file included from ../dlib-19.24/dlib/all/../cuda/cpu_dlib.h:9:
In file included from ../dlib-19.24/dlib/all/../cuda/tensor.h:8:
In file included from ../dlib-19.24/dlib/all/../cuda/../matrix.h:6:
../dlib-19.24/dlib/all/../cuda/../matrix/matrix.h:1153:47: warning: division by zero is undefined [-Wdivision-by-zero]
1153 | data.set_size(NR, l.size()/NR);
| ^~~
../dlib-19.24/dlib/all/../svm/auto.cpp:78:13: note: in instantiation of member function 'dlib::matrix<double, 0, 1>::matrix' requested here
78 | {1e-5, 1e-5, 1e-5}, // lower bound constraints on gamma, c1, and c2, respectively
| ^
1 warning and 17 errors generated.
gmake[4]: *** [Makefile:2588: ../dlib-19.24/dlib/all/libRNA_concentrations_la-source.lo] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src/ViennaRNA'
gmake[3]: *** [Makefile:3218: all-recursive] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src/ViennaRNA'
gmake[2]: *** [Makefile:566: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src'
gmake[1]: *** [Makefile:746: all-recursive] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0'
gmake: *** [Makefile:627: all] Error 2
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/biology/viennarna