From nobody Sat Nov 02 05:25:27 2024 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4XgR5M4pcJz5bm9r for ; Sat, 02 Nov 2024 05:25:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R10" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4XgR5M1b3xz4SJy for ; Sat, 2 Nov 2024 05:25:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1730525127; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=HcMzfd1NLGD7IzPmaQhzrbsltWqSl5My8rqAmRutA+o=; b=T/88AsYtcwFy7GPVwJm6HfIZI2GFNOnMJ/oaPBtcPNy/4wyUbPvETBdJ2z9FK5aRgBCLBC 4thNUgiKKlhd62FrEd0DwnsWS5k3lCXepXeUsVS30mC6R4Zlsl2IOnMZuSzhaGyUmNV95p eaBHdNTMGWMHrM9kBpm5njcL4TpyGU5T9U6XYiu+jnbH17YY7U7A+8m/LvHGVneGQuh34j 894C+IOeRGTkuLzMf/dqSmW7eExtTVFXq7H8/c7QE2zstOMtL7GMZrCwot7Q/YVZHv8q6h TcYsI5gDQ66hUGV8DeBduMVMT2KTh0Ow6mxh1YUYNLy6zE1BydkyIl6Cs8RuoA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1730525127; a=rsa-sha256; cv=none; b=JMwnaU+dEw7x431tLzLWhFVI2QcpPDLJ2aoUAY+eVYdE/xkoqWlRsETU0OfOYW3QRLJuUg qGm4GX1/teLuc4EpnF3NcXyMbmKXA5oSyXdpkffLEQfDnUDZ9kbjeUbvrUc7ZPGieB4JMI gWAOXdZtwr52eR+KxJ+9ry3rjKL/vYAifYm+SOTUGeMwD9u1F2K/87nkP/PmfWrjuMg1Y9 KjcdBreiNJn5M908WUjwggjUa+OaPOZksTQO+fNBes097XzZak5g2jauEqpYVOjELTuuSu RRYULiT8ljKOtCSkqheJPoH1MKREMqJrLgVG1LZL3FrF0tNzQlgxaiiU5trGWw== Received: from beefy18.nyi.freebsd.org (beefy18.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:21]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4XgR5M12K2zrwY for ; Sat, 2 Nov 2024 05:25:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 68aa by beefy18.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy18.nyi.freebsd.org); Sat, 02 Nov 2024 05:25:27 +0000 To: yuri@FreeBSD.org Subject: [package - main-amd64-default][biology/viennarna] Failed for viennarna-2.7.0 in build Cc: pkg-fallout@FreeBSD.org Date: Sat, 02 Nov 2024 05:25:27 +0000 Message-Id: <6725b7c7.68aa.79283a7a@beefy18.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p009a7c198ee2_s8d6feaaaa26/logs/viennarna-2.7.0.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p009a7c198ee2_s8d6feaaaa26 Log: =>> Building biology/viennarna build started at Sat Nov 2 05:21:51 UTC 2024 port directory: /usr/ports/biology/viennarna package name: viennarna-2.7.0 building for: FreeBSD main-amd64-default-job-07 15.0-CURRENT FreeBSD 15.0-CURRENT 1500026 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1908 Nov 2 01:01 /usr/ports/biology/viennarna/Makefile Ports top last git commit: 009a7c198ee Ports top unclean checkout: no Port dir last git commit: c7623ae9b3f Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500023 Jail OSVERSION: 1500026 Job Id: 07 !!! Jail is newer than host. (Jail: 1500026, Host: 1500023) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500026 UNAME_v=FreeBSD 15.0-CURRENT 1500026 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-amd64-default/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for viennarna-2.7.0: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/viennarna/work/.cache HOME=/wrkdirs/usr/ports/biology/viennarna/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/viennarna/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/viennarna/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/usr/local/bin/bash CONFIG_SHELL=/usr/local/bin/bash ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local /bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DEFAULT_AUTOCONF=2.72 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/viennarna/work/.cache HOME=/wrkdirs/usr/ports/biology/viennarna/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/viennarna/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/viennarna/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr /local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DEFAULT_AUTOCONF=2.72 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Dregister= -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3 PERL_VER=5.36 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/ViennaRNA" EXAMPLESDIR="share/examples/ViennaRNA" DATADIR="share/viennarna" WWWDIR="www/viennarna" ETCDIR="etc/viennarna" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/viennarna DOCSDIR=/usr/local/share/doc/ViennaRNA EXAMPLESDIR=/usr/local/share/examples/ViennaRNA WWWDIR=/usr/local/www/viennarna ETCDIR=/usr/local/etc/viennarna --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- ulimit: can't get limit: Invalid argument cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License ViennaRNALicense accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> viennarna-2.7.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.3.pkg [main-amd64-default-job-07] Installing pkg-1.21.3... [main-amd64-default-job-07] Extracting pkg-1.21.3: .......... done ===> viennarna-2.7.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of viennarna-2.7.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License ViennaRNALicense accepted by the user => ViennaRNA-2.7.0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_7_x/ViennaRNA-2.7.0.tar.gz ViennaRNA-2.7.0.tar.gz 50 MB 13 MBps 04s ===> Fetching all distfiles required by viennarna-2.7.0 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License ViennaRNALicense accepted by the user ===> Fetching all distfiles required by viennarna-2.7.0 for building => SHA256 Checksum OK for ViennaRNA-2.7.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License ViennaRNALicense accepted by the user ===> Fetching all distfiles required by viennarna-2.7.0 for building ===> Extracting for viennarna-2.7.0 => SHA256 Checksum OK for ViennaRNA-2.7.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for viennarna-2.7.0 ===> Applying FreeBSD patches for viennarna-2.7.0 from /usr/ports/biology/viennarna/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> viennarna-2.7.0 depends on executable: bash - not found | ^ ../dlib-19.24/dlib/all/../bigint/../unicode/unicode.h:509:18: note: in instantiation of member function 'std::basic_string::push_back' requested here 509 | temp.push_back(ch); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2912:3: error: implicit instantiation of undefined template 'std::char_traits' 2912 | traits_type::assign(*++__p, value_type()); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2535:5: error: implicit instantiation of undefined template 'std::char_traits' 2535 | traits_type::copy(std::__to_address(__p), std::__to_address(__old_p), __n_copy); | ^ /usr/include/c++/v1/string:2556:3: note: in instantiation of member function 'std::basic_string::__grow_by' requested here 2556 | __grow_by(__old_cap, __delta_cap, __old_sz, __n_copy, __n_del, __n_add); | ^ /usr/include/c++/v1/string:2898:5: note: in instantiation of member function 'std::basic_string::__grow_by_without_replace' requested here 2898 | __grow_by_without_replace(__cap, 1, __sz, __sz, 0); | ^ ../dlib-19.24/dlib/all/../bigint/../unicode/unicode.h:509:18: note: in instantiation of member function 'std::basic_string::push_back' requested here 509 | temp.push_back(ch); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2538:5: error: implicit instantiation of undefined template 'std::char_traits' 2538 | traits_type::copy( | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2861:5: error: implicit instantiation of undefined template 'std::char_traits' 2861 | traits_type::assign(std::__to_address(__p) + __sz, __n, __c); | ^ /usr/include/c++/v1/string:3302:5: note: in instantiation of member function 'std::basic_string::append' requested here 3302 | append(__n - __sz, __c); | ^ /usr/include/c++/v1/string:1303:84: note: in instantiation of member function 'std::basic_string::resize' requested here 1303 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX20 void resize(size_type __n) { resize(__n, value_type()); } | ^ ../dlib-19.24/dlib/all/../bigint/../serialize.h:2011:14: note: in instantiation of member function 'std::basic_string::resize' requested here 2011 | item.resize(size); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2864:5: error: implicit instantiation of undefined template 'std::char_traits' 2864 | traits_type::assign(__p[__sz], value_type()); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2221:5: error: implicit instantiation of undefined template 'std::char_traits' 2221 | traits_type::assign(__p[__newsz], value_type()); | ^ /usr/include/c++/v1/string:2134:5: note: in instantiation of member function 'std::basic_string::__null_terminate_at' requested here 2134 | __null_terminate_at(std::__to_address(__get_pointer()), __pos); | ^ /usr/include/c++/v1/string:3304:5: note: in instantiation of member function 'std::basic_string::__erase_to_end' requested here 3304 | __erase_to_end(__n); | ^ /usr/include/c++/v1/string:1303:84: note: in instantiation of member function 'std::basic_string::resize' requested here 1303 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX20 void resize(size_type __n) { resize(__n, value_type()); } | ^ ../dlib-19.24/dlib/all/../bigint/../serialize.h:2011:14: note: in instantiation of member function 'std::basic_string::resize' requested here 2011 | item.resize(size); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2825:29: error: implicit instantiation of undefined template 'std::char_traits' 2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s)) | ^ ../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string::assign' requested here 54 | dest.assign((const unichar *)(src)); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2825:77: error: implicit instantiation of undefined template 'std::char_traits' 2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s)) | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2826:80: error: implicit instantiation of undefined template 'std::char_traits' 2826 | : __assign_external(__s, traits_type::length(__s))) | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2208:5: error: implicit instantiation of undefined template 'std::char_traits' 2208 | traits_type::move(std::__to_address(__p), __s, __n); | ^ /usr/include/c++/v1/string:2825:57: note: in instantiation of member function 'std::basic_string::__assign_short' requested here 2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s)) | ^ ../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string::assign' requested here 54 | dest.assign((const unichar *)(src)); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2209:5: error: implicit instantiation of undefined template 'std::char_traits' 2209 | traits_type::assign(__p[__n], value_type()); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2817:33: error: implicit instantiation of undefined template 'std::char_traits' 2817 | return __assign_external(__s, traits_type::length(__s)); | ^ /usr/include/c++/v1/string:2827:14: note: in instantiation of member function 'std::basic_string::__assign_external' requested here 2827 | : __assign_external(__s); | ^ ../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string::assign' requested here 54 | dest.assign((const unichar *)(src)); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:82: In file included from ../dlib-19.24/dlib/all/../cuda/cpu_dlib.cpp:8: In file included from ../dlib-19.24/dlib/all/../cuda/cpu_dlib.h:9: In file included from ../dlib-19.24/dlib/all/../cuda/tensor.h:8: In file included from ../dlib-19.24/dlib/all/../cuda/../matrix.h:6: ../dlib-19.24/dlib/all/../cuda/../matrix/matrix.h:1153:47: warning: division by zero is undefined [-Wdivision-by-zero] 1153 | data.set_size(NR, l.size()/NR); | ^~~ ../dlib-19.24/dlib/all/../svm/auto.cpp:78:13: note: in instantiation of member function 'dlib::matrix::matrix' requested here 78 | {1e-5, 1e-5, 1e-5}, // lower bound constraints on gamma, c1, and c2, respectively | ^ 1 warning and 17 errors generated. gmake[4]: *** [Makefile:2588: ../dlib-19.24/dlib/all/libRNA_concentrations_la-source.lo] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src/ViennaRNA' gmake[3]: *** [Makefile:3218: all-recursive] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src/ViennaRNA' gmake[2]: *** [Makefile:566: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src' gmake[1]: *** [Makefile:746: all-recursive] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0' gmake: *** [Makefile:627: all] Error 2 ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped making "build" in /usr/ports/biology/viennarna