[package - 124i386-quarterly][biology/py-dnaio] Failed for py39-dnaio-0.5.1 in build
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Date: Tue, 11 Jul 2023 20:28:55 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/6777c48daefc/logs/py39-dnaio-0.5.1.log
Build URL: https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=6777c48daefc
Log:
=>> Building biology/py-dnaio
build started at Tue Jul 11 20:28:49 UTC 2023
port directory: /usr/ports/biology/py-dnaio
package name: py39-dnaio-0.5.1
building for: FreeBSD 124i386-quarterly-job-09 12.4-RELEASE-p3 FreeBSD 12.4-RELEASE-p3 i386
maintained by: jwb@FreeBSD.org
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py39-dnaio-0.5.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.19.2.pkg
[124i386-quarterly-job-09] Installing pkg-1.19.2...
[124i386-quarterly-job-09] Extracting pkg-1.19.2: .......... done
===> py39-dnaio-0.5.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py39-dnaio-0.5.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py39-dnaio-0.5.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py39-dnaio-0.5.1 for building
=> SHA256 Checksum OK for dnaio-0.5.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by py39-dnaio-0.5.1 for building
===> Extracting for py39-dnaio-0.5.1
=> SHA256 Checksum OK for dnaio-0.5.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py39-dnaio-0.5.1
===========================================================================
=======================<phase: build-depends >============================
===> py39-dnaio-0.5.1 depends on package: py39-setuptools_scm>0 - not found
===> Installing existing package /packages/All/py39-setuptools_scm-6.4.2.pkg
[124i386-quarterly-job-09] Installing py39-setuptools_scm-6.4.2...
[124i386-quarterly-job-09] `-- Installing py39-packaging-23.1...
[124i386-quarterly-job-09] | `-- Installing python39-3.9.17...
[124i386-quarterly-job-09] | | `-- Installing gettext-runtime-0.21.1...
[124i386-quarterly-job-09] | | `-- Installing indexinfo-0.3.1...
[124i386-quarterly-job-09] | | `-- Extracting indexinfo-0.3.1: .... done
[124i386-quarterly-job-09] | | `-- Extracting gettext-runtime-0.21.1: .......... done
[124i386-quarterly-job-09] | | `-- Installing libffi-3.4.4...
[124i386-quarterly-job-09] | | `-- Extracting libffi-3.4.4: .......... done
[124i386-quarterly-job-09] | | `-- Installing mpdecimal-2.5.1...
[124i386-quarterly-job-09] | | `-- Extracting mpdecimal-2.5.1: .......... done
[124i386-quarterly-job-09] | | `-- Installing readline-8.2.1...
[124i386-quarterly-job-09] | | `-- Extracting readline-8.2.1: .......... done
[124i386-quarterly-job-09] | `-- Extracting python39-3.9.17: .......... done
[124i386-quarterly-job-09] `-- Extracting py39-packaging-23.1: .......... done
[124i386-quarterly-job-09] `-- Installing py39-setuptools-63.1.0_1...
[124i386-quarterly-job-09] `-- Extracting py39-setuptools-63.1.0_1: .......... done
[124i386-quarterly-job-09] `-- Installing py39-tomli-2.0.1_2...
[124i386-quarterly-job-09] `-- Extracting py39-tomli-2.0.1_2: .......... done
[124i386-quarterly-job-09] Extracting py39-setuptools_scm-6.4.2: .......... done
=====
Message from python39-3.9.17:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py39-gdbm databases/py-gdbm@py39
py39-sqlite3 databases/py-sqlite3@py39
py39-tkinter x11-toolkits/py-tkinter@py39
===> py39-dnaio-0.5.1 depends on package: py39-setuptools_scm>0 - found
===> Returning to build of py39-dnaio-0.5.1
===> py39-dnaio-0.5.1 depends on package: py39-setuptools>=63.1.0 - found
===> py39-dnaio-0.5.1 depends on file: /usr/local/bin/python3.9 - found
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for py39-dnaio-0.5.1
running config
===========================================================================
=======================<phase: build >============================
===> Building for py39-dnaio-0.5.1
running build
running build_py
creating build
creating build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39
creating build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/_util.py -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/__init__.py -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/writers.py -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/readers.py -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/chunks.py -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/exceptions.py -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/_version.py -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/py.typed -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/_version.pyi -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
copying src/dnaio/_core.pyi -> build/lib.freebsd-12.4-RELEASE-p3-i386-cpython-39/dnaio
running build_ext
building 'dnaio._core' extension
creating build/temp.freebsd-12.4-RELEASE-p3-i386-cpython-39
creating build/temp.freebsd-12.4-RELEASE-p3-i386-cpython-39/src
creating build/temp.freebsd-12.4-RELEASE-p3-i386-cpython-39/src/dnaio
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -c src/dnaio/_core.c -o build/temp.freebsd-12.4-RELEASE-p3-i386-cpython-39/src/dnaio/_core.o
error: command '/usr/bin/cc' failed with exit code -11
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/py-dnaio