[package - 140releng-powerpc64le-quarterly][biology/cytoscape] Failed for cytoscape-3.6.1 in build/runaway
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Date: Tue, 26 Dec 2023 19:35:06 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/140releng-powerpc64le-quarterly/74b68b434d29/logs/cytoscape-3.6.1.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=140releng-powerpc64le-quarterly&build=74b68b434d29 Log: =>> Building biology/cytoscape build started at Tue Dec 26 17:21:21 UTC 2023 port directory: /usr/ports/biology/cytoscape package name: cytoscape-3.6.1 building for: FreeBSD 140releng-powerpc64le-quarterly-job-06 14.0-RC3 FreeBSD 14.0-RC3 1400097 powerpc maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2461 Oct 3 01:04 /usr/ports/biology/cytoscape/Makefile Ports top last git commit: 74b68b434 Ports top unclean checkout: no Port dir last git commit: 2195304f9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500000 Jail OSVERSION: 1400097 Job Id: 06 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RC3 1400097 UNAME_r=14.0-RC3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=140releng-powerpc64le-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTAL L_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cytoscape" EXAMPLESDIR="share/examples/cytoscape" DATADIR="share/cytoscape" WWWDIR="www/cytoscape" ETCDIR="etc/cytoscape" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cytoscape DOCSDIR=/usr/local/share/doc/cytoscape EXAMPLESDIR=/usr/local/share/examples/cytoscape WWWDIR=/usr/local/www/cytoscape ETCDIR=/usr/local/etc/cytoscape --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [140releng-powerpc64le-quarterly-job-06] Installing pkg-1.20.9... [140releng-powerpc64le-quarterly-job-06] Extracting pkg-1.20.9: .......... done ===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cytoscape-3.6.1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1 for building => SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1 for building ===> Extracting for cytoscape-3.6.1 => SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for cytoscape-3.6.1 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1 depends on package: maven363>0 - not found ===> Installing existing package /packages/All/maven363-3.6.3.pkg [140releng-powerpc64le-quarterly-job-06] Installing maven363-3.6.3... [140releng-powerpc64le-quarterly-job-06] `-- Installing maven-wrapper-2... [140releng-powerpc64le-quarterly-job-06] `-- Extracting maven-wrapper-2: ... done [140releng-powerpc64le-quarterly-job-06] `-- Installing openjdk8-8.382.05.1... [140releng-powerpc64le-quarterly-job-06] | `-- Installing alsa-lib-1.2.2_1... [140releng-powerpc64le-quarterly-job-06] | `-- Extracting alsa-lib-1.2.2_1: .......... done [140releng-powerpc64le-quarterly-job-06] | `-- Installing dejavu-2.37_3... [140releng-powerpc64le-quarterly-job-06] | | `-- Installing fontconfig-2.14.2,1... [140releng-powerpc64le-quarterly-job-06] | | `-- Installing expat-2.5.0... [140releng-powerpc64le-quarterly-job-06] | | `-- Extracting expat-2.5.0: .......... done [140releng-powerpc64le-quarterly-job-06] | | `-- Installing freetype2-2.13.1... <snip> [[1;34mINFO[m] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [[1;34mINFO[m] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [[1;34mINFO[m] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [[1;34mINFO[m] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [[1;34mINFO[m] Depends timestamp [1,522,256,111,000], produces timestamp [1,703,611,414,325]. [[1;34mINFO[m] Skipped XJC execution. Generated sources were up-to-date. [[1;34mINFO[m] [[1;34mINFO[m] [1m>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>[m [[1;34mINFO[m] [1mForking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1[m [[1;34mINFO[m] [1m>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>[m [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-jaxb2-plugin:0.8.1:generate[m [1m(sessionState)[m @ [36mswing-application-impl[0;1m ---[m [[1;34mINFO[m] Started execution. [[1;34mINFO[m] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [[1;34mINFO[m] Detected JAXB API version [2.2]. [[1;34mINFO[m] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus. plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [[1;34mINFO[m] specVersion:2.1 [[1;34mINFO[m] encoding:UTF-8 [[1;34mINFO[m] schemaLanguage:null [[1;34mINFO[m] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [[1;34mINFO[m] schemaIncludes:[sessionState.xsd] [[1;34mINFO[m] schemaExcludes:null [[1;34mINFO[m] schemas:[] [[1;34mINFO[m] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [[1;34mINFO[m] bindingIncludes:[*.xjb] [[1;34mINFO[m] bindingExcludes:null [[1;34mINFO[m] bindings:[] [[1;34mINFO[m] disableDefaultExcludes:false [[1;34mINFO[m] catalog:null [[1;34mINFO[m] catalogResolver:null [[1;34mINFO[m] generatePackage:org.cytoscape.internal.io.sessionstate [[1;34mINFO[m] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [[1;34mINFO[m] readOnly:false [[1;34mINFO[m] extension:false [[1;34mINFO[m] strict:true [[1;34mINFO[m] writeCode:true [[1;34mINFO[m] verbose:true [[1;34mINFO[m] debug:false [[1;34mINFO[m] args:[] [[1;34mINFO[m] forceRegenerate:false [[1;34mINFO[m] removeOldOutput:false [[1;34mINFO[m] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [[1;34mINFO[m] otherDepends:null [[1;34mINFO[m] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [[1;34mINFO[m] episode:true [[1;34mINFO[m] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [[1;34mINFO[m] plugins:null [[1;34mINFO[m] episodes:null [[1;34mINFO[m] useDependenciesAsEpisodes:false [[1;34mINFO[m] xjcPlugins:null [[1;34mINFO[m] episodes:null [[1;34mINFO[m] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [[1;34mINFO[m] bindingFiles (calculated):[] [[1;34mINFO[m] xjcPluginArtifacts (resolved):[] [[1;34mINFO[m] xjcPluginFiles (resolved):[] [[1;34mINFO[m] xjcPluginURLs (resolved):[] [[1;34mINFO[m] episodeArtifacts (resolved):[] [[1;34mINFO[m] episodeFiles (resolved):[] [[1;34mINFO[m] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25fcc928 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [[1;34mINFO[m] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [[1;34mINFO[m] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [[1;34mINFO[m] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [[1;34mINFO[m] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6 .1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [[1;34mINFO[m] Depends timestamp [1,522,256,111,000], produces timestamp [1,703,611,415,118]. [[1;34mINFO[m] Skipped XJC execution. Generated sources were up-to-date. [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-jaxb2-plugin:0.8.1:generate[m [1m(networkList)[m @ [36mswing-application-impl[0;1m ---[m [[1;34mINFO[m] Started execution. [[1;34mINFO[m] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [[1;34mINFO[m] Detected JAXB API version [2.2]. [[1;34mINFO[m] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus. plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [[1;34mINFO[m] specVersion:2.1 [[1;34mINFO[m] encoding:UTF-8 [[1;34mINFO[m] schemaLanguage:null [[1;34mINFO[m] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [[1;34mINFO[m] schemaIncludes:[networkList.xsd] [[1;34mINFO[m] schemaExcludes:null [[1;34mINFO[m] schemas:[] [[1;34mINFO[m] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [[1;34mINFO[m] bindingIncludes:[*.xjb] [[1;34mINFO[m] bindingExcludes:null [[1;34mINFO[m] bindings:[] [[1;34mINFO[m] disableDefaultExcludes:false [[1;34mINFO[m] catalog:null [[1;34mINFO[m] catalogResolver:null [[1;34mINFO[m] generatePackage:org.cytoscape.internal.io.networklist [[1;34mINFO[m] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [[1;34mINFO[m] readOnly:false [[1;34mINFO[m] extension:false [[1;34mINFO[m] strict:true [[1;34mINFO[m] writeCode:true [[1;34mINFO[m] verbose:true [[1;34mINFO[m] debug:false [[1;34mINFO[m] args:[] [[1;34mINFO[m] forceRegenerate:false [[1;34mINFO[m] removeOldOutput:false [[1;34mINFO[m] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [[1;34mINFO[m] otherDepends:null [[1;34mINFO[m] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [[1;34mINFO[m] episode:true [[1;34mINFO[m] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [[1;34mINFO[m] plugins:null [[1;34mINFO[m] episodes:null [[1;34mINFO[m] useDependenciesAsEpisodes:false [[1;34mINFO[m] xjcPlugins:null [[1;34mINFO[m] episodes:null [[1;34mINFO[m] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [[1;34mINFO[m] bindingFiles (calculated):[] [[1;34mINFO[m] xjcPluginArtifacts (resolved):[] [[1;34mINFO[m] xjcPluginFiles (resolved):[] [[1;34mINFO[m] xjcPluginURLs (resolved):[] [[1;34mINFO[m] episodeArtifacts (resolved):[] [[1;34mINFO[m] episodeFiles (resolved):[] [[1;34mINFO[m] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@182a8bf8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [[1;34mINFO[m] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [[1;34mINFO[m] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [[1;34mINFO[m] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [[1;34mINFO[m] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [[1;34mINFO[m] Depends timestamp [1,522,256,111,000], produces timestamp [1,703,611,415,827]. [[1;34mINFO[m] Skipped XJC execution. Generated sources were up-to-date. [[1;34mINFO[m] [[1;34mINFO[m] [1m>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>[m [[1;34mINFO[m] [1mForking Cytoscape Feature Repository 3.6.1[m [[1;34mINFO[m] [1m>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>[m [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:2.6:copy-resources[m [1m(copy-resources)[m @ [36mfeatures[0;1m ---[m [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources. [[1;34mINFO[m] Copying 1 resource [[1;34mINFO[m] [[1;34mINFO[m] [1m<<< [0;32mmaven-source-plugin:2.4:aggregate[m [1m(aggregate-source)[0;1m < [0;1mgenerate-sources[m @ [36mio-api[0;1m <<<[m [[1;34mINFO[m] [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:2.4:aggregate[m [1m(aggregate-source)[m @ [36mio-api[0;1m ---[m [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:2.6:test-jar[m [1m(default)[m @ [36mio-api[0;1m ---[m [[1;34mINFO[m] Skipping packaging of the test-jar [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mio-api[0;1m ---[m [[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/target/io-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1.jar [[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1.pom [[1;34mINFO[m] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/target/io-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1-sources.jar [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-bundle-plugin:3.0.0:install[m [1m(default-install)[m @ [36mio-api[0;1m ---[m [[1;34mINFO[m] Installing org/cytoscape/io-api/3.6.1/io-api-3.6.1.jar [[1;34mINFO[m] Writing OBR metadata [[1;34mINFO[m] [[1;34mINFO[m] [1m--------------------< [0;36morg.cytoscape:core-task-api[0;1m >---------------------[m [[1;34mINFO[m] [1mBuilding Cytoscape Core Task API (core-task-api) 3.6.1 [17/117][m [[1;34mINFO[m] [1m-------------------------------[ bundle ]-------------------------------[m [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mcore-task-api[0;1m ---[m [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources. [[1;34mINFO[m] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/src/main/resources [[1;34mINFO[m] Copying 0 resource [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.3:compile[m [1m(default-compile)[m @ [36mcore-task-api[0;1m ---[m [[1;34mINFO[m] Changes detected - recompiling the module! [[1;34mINFO[m] Compiling 106 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/target/classes [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mcore-task-api[0;1m ---[m [[1;34mINFO[m] Not copying test resources [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.3:testCompile[m [1m(default-testCompile)[m @ [36mcore-task-api[0;1m ---[m [[1;34mINFO[m] Not compiling test sources [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.12.4:test[m [1m(default-test)[m @ [36mcore-task-api[0;1m ---[m [[1;34mINFO[m] Tests are skipped. [[1;34mINFO[m] [[1;34mINFO[m] [1m--- [0;32mmaven-bundle-plugin:3.0.0:bundle[m [1m(default-bundle)[m @ [36mcore-task-api[0;1m ---[m =>> Killing runaway build after 7200 seconds with no output