From nobody Tue Dec 26 19:35:06 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4T04jk3nFJz55PZ2 for ; Tue, 26 Dec 2023 19:35:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4T04jk25gpz3NLt for ; Tue, 26 Dec 2023 19:35:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1703619306; a=rsa-sha256; cv=none; b=xkIFIYN5duTX6P3ytTOC+sj47lm1fwk4xP0H6BMqCHGiQA/A6+Pd5ZzvxNSYchhonp4M6V GGUm2JGEkf9u2b6FLfCtPxJ8DIV+vAsFzrNzMoXv0SPoD0WeOTPWQCH7Te810Arxr9etL0 rXFoBBzz/8JbKSPJ9WuN/sSQ2YkRuOhMmTzon/CgmynS9GqDOC4Ce/i+CJqGHcM+aUfWt9 +qMCqt78YJPTLRHt9ogdnPKy4Xp2P4Hsf2mDzcNSnu0lvGi3qmKAK/awoa+SjS3DAT4slA bCs8Gj8yV+FzeX6v7KFKaBBg50l5XXPkicwM8cEvnYNYieUQ8Ab6lgzBsJ3GXA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1703619306; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc; bh=6sOza26OBVuBRdezSv4BXdN+4amsg0ooepk4nVOw5p8=; b=KBiCm3HcTjUKkxbiQRxG2GrCXv9TE99J77Bbw/T93Tp0aIzx0Q6+5NdqPj0iJbPT5rphdn NwiZrHomMC8dzljJSGZQkJ3FUph7L7RONeCKrt5qKBLLTSgYPV32tyI0N6JLXH0QC4wF6t 3+82zlLnuMCo5uABALNi2TF7oEFvQLv2sIwo42XxsJru9PHsMDsC4i/yFnOf6b+8Y4mXgN 6oGQQtKMpIkMxyQWaOpbXkiidyenKsfVjhDeYuX5U9LvvDSpnGZf0jHX0YQkkSzQ134eHs pV0ZGQ/QAIUDAxKZQ8au2L8+fnoAFsDwEsHoJ4E1gXnxl5DCLFpt/ehX5KVPAw== Received: from foul2.nyi.freebsd.org (foul2.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:27]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4T04jk17mrz17PK for ; Tue, 26 Dec 2023 19:35:06 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from foul2.nyi.freebsd.org (localhost [127.0.0.1]) by foul2.nyi.freebsd.org (8.17.1/8.17.1) with ESMTP id 3BQJZ60Y056977 for ; Tue, 26 Dec 2023 19:35:06 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by foul2.nyi.freebsd.org (8.17.1/8.17.1/Submit) id 3BQJZ60v056968; Tue, 26 Dec 2023 19:35:06 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 26 Dec 2023 19:35:06 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202312261935.3BQJZ60v056968@foul2.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 140releng-powerpc64le-quarterly][biology/cytoscape] Failed for cytoscape-3.6.1 in build/runaway List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/foul2/data/140releng-powerpc64le-quarterly/74b68b434d29/logs/cytoscape-3.6.1.log Build URL: https://pkg-status.freebsd.org/foul2/build.html?mastername=140releng-powerpc64le-quarterly&build=74b68b434d29 Log: =>> Building biology/cytoscape build started at Tue Dec 26 17:21:21 UTC 2023 port directory: /usr/ports/biology/cytoscape package name: cytoscape-3.6.1 building for: FreeBSD 140releng-powerpc64le-quarterly-job-06 14.0-RC3 FreeBSD 14.0-RC3 1400097 powerpc maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2461 Oct 3 01:04 /usr/ports/biology/cytoscape/Makefile Ports top last git commit: 74b68b434 Ports top unclean checkout: no Port dir last git commit: 2195304f9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.0 Host OSVERSION: 1500000 Jail OSVERSION: 1400097 Job Id: 06 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400097 UNAME_v=FreeBSD 14.0-RC3 1400097 UNAME_r=14.0-RC3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.0 MASTERMNT=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/06/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=140releng-powerpc64le-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/140releng-powerpc64le-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTAL L_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cytoscape" EXAMPLESDIR="share/examples/cytoscape" DATADIR="share/cytoscape" WWWDIR="www/cytoscape" ETCDIR="etc/cytoscape" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cytoscape DOCSDIR=/usr/local/share/doc/cytoscape EXAMPLESDIR=/usr/local/share/examples/cytoscape WWWDIR=/usr/local/www/cytoscape ETCDIR=/usr/local/etc/cytoscape --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.20.9.pkg [140releng-powerpc64le-quarterly-job-06] Installing pkg-1.20.9... [140releng-powerpc64le-quarterly-job-06] Extracting pkg-1.20.9: .......... done ===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cytoscape-3.6.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1 for building => SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by cytoscape-3.6.1 for building ===> Extracting for cytoscape-3.6.1 => SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for cytoscape-3.6.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1 depends on package: maven363>0 - not found ===> Installing existing package /packages/All/maven363-3.6.3.pkg [140releng-powerpc64le-quarterly-job-06] Installing maven363-3.6.3... [140releng-powerpc64le-quarterly-job-06] `-- Installing maven-wrapper-2... [140releng-powerpc64le-quarterly-job-06] `-- Extracting maven-wrapper-2: ... done [140releng-powerpc64le-quarterly-job-06] `-- Installing openjdk8-8.382.05.1... [140releng-powerpc64le-quarterly-job-06] | `-- Installing alsa-lib-1.2.2_1... [140releng-powerpc64le-quarterly-job-06] | `-- Extracting alsa-lib-1.2.2_1: .......... done [140releng-powerpc64le-quarterly-job-06] | `-- Installing dejavu-2.37_3... [140releng-powerpc64le-quarterly-job-06] | | `-- Installing fontconfig-2.14.2,1... [140releng-powerpc64le-quarterly-job-06] | | `-- Installing expat-2.5.0... [140releng-powerpc64le-quarterly-job-06] | | `-- Extracting expat-2.5.0: .......... done [140releng-powerpc64le-quarterly-job-06] | | `-- Installing freetype2-2.13.1... [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,703,611,414,325]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus. plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25fcc928 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6 .1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,703,611,415,118]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus. plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@182a8bf8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,703,611,415,827]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ io-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ io-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ io-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ io-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/target/io-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/target/io-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ io-api --- [INFO] Installing org/cytoscape/io-api/3.6.1/io-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:core-task-api >--------------------- [INFO] Building Cytoscape Core Task API (core-task-api) 3.6.1 [17/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ core-task-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ core-task-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 106 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ core-task-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ core-task-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ core-task-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ core-task-api --- =>> Killing runaway build after 7200 seconds with no output