[package - 124i386-quarterly][biology/py-scikit-bio] Failed for py39-scikit-bio-0.5.8_1 in build

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From: <pkg-fallout_at_FreeBSD.org>
Date: Tue, 22 Aug 2023 17:16:22 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/f3d8c4bf5c40/logs/py39-scikit-bio-0.5.8_1.log
Build URL:      https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=f3d8c4bf5c40
Log:

=>> Building biology/py-scikit-bio
build started at Tue Aug 22 17:15:56 UTC 2023
port directory: /usr/ports/biology/py-scikit-bio
package name: py39-scikit-bio-0.5.8_1
building for: FreeBSD 124i386-quarterly-job-06 12.4-RELEASE-p4 FreeBSD 12.4-RELEASE-p4 i386
maintained by: yuri@FreeBSD.org
Makefile ident: 
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yuri@FreeBSD.org
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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py39-scikit-bio-0.5.8_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.19.2.pkg
[124i386-quarterly-job-06] Installing pkg-1.19.2...
[124i386-quarterly-job-06] Extracting pkg-1.19.2: .......... done
===>   py39-scikit-bio-0.5.8_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-scikit-bio-0.5.8_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scikit-bio-0.5.8_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scikit-bio-0.5.8_1 for building
=> SHA256 Checksum OK for scikit-bio-0.5.8.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-scikit-bio-0.5.8_1 for building
===>  Extracting for py39-scikit-bio-0.5.8_1
=> SHA256 Checksum OK for scikit-bio-0.5.8.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py39-scikit-bio-0.5.8_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py39-scikit-bio-0.5.8_1 depends on package: py39-numpy>=1.16,1<1.25,1 - not found
===>   Installing existing package /packages/All/py39-numpy-1.24.1_4,1.pkg
[124i386-quarterly-job-06] Installing py39-numpy-1.24.1_4,1...
[124i386-quarterly-job-06] `-- Installing gcc12-12.2.0_6...
[124i386-quarterly-job-06] |   `-- Installing binutils-2.40_4,1...
[124i386-quarterly-job-06] |   | `-- Installing gettext-runtime-0.21.1...
[124i386-quarterly-job-06] |   |   `-- Installing indexinfo-0.3.1...
[124i386-quarterly-job-06] |   |   `-- Extracting indexinfo-0.3.1: .... done
[124i386-quarterly-job-06] |   | `-- Extracting gettext-runtime-0.21.1: .......... done
[124i386-quarterly-job-06] |   | `-- Installing zstd-1.5.5...
[124i386-quarterly-job-06] |   |   `-- Installing liblz4-1.9.4,1...
[124i386-quarterly-job-06] |   |   `-- Extracting liblz4-1.9.4,1: .......... done
[124i386-quarterly-job-06] |   | `-- Extracting zstd-1.5.5: .......... done
<snip>
copying skbio/io/format/tests/data/embl_constructed -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_multi_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_single_record -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_single_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_rna -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_single_record -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/empty -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data
running build_ext
building 'skbio.metadata._intersection' extension
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio
creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/metadata
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -msse2 -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c skbio/metadata/_intersection.c -o build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/metadata/_intersection.o
error: command '/usr/bin/cc' failed with exit code -10
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/py-scikit-bio