From nobody Tue Aug 22 17:16:22 2023 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4RVbbq1Jhpz4r96F for ; Tue, 22 Aug 2023 17:16:23 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4RVbbp6jDMz3GLS for ; Tue, 22 Aug 2023 17:16:22 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1692724582; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=2E0m52yJm8vwYcncwRWNcY4818uAKsnGVaHY6TAclL0=; b=tLfuwDuv2aIZrOxLfrOTf4qU6oFaWN2xpv8+RV/8OfVA750eSe0c5XDDxsVnOzbnii1vnH M1ZPNMA3yn3GL6eOHciQIx1C4PO7KhkXVVOq4DP/7NsI1roLvBYnrnaRCmDw3HTgoe5oZU X5OtWeQdU9shthdJ4ltWGqrbPU/mjXvp5vQ8Fytff+hx5cU3vvTl+h4c1Fh9LKVFZQ8AyG kHoQWOHEFhKe3nXAaBgNN2G8024HVYJoaxEpFhUySrLCoWxsgDKt65zEDkPZcj/Ss9tVhD tAeBAWp1NUvuzvtcrF6K65LjorIC/AJGF2a7ccoHzhO3oxRSYOtS+ScCAVjQzA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1692724582; a=rsa-sha256; cv=none; b=wKU8TN3Tp8GLRuACz0sQgQ32Q7rO7n+RIqxfNDmB8NgM6DrvrV364sxGfZzX9D7M34kZM0 JeM95S5eVEiHQ5eHxJTky87Wyr5GiZGfSwpgV2NvSaRvB3bk1yD206RfMPOv2Qa04kmUXw YUWFsi2QLY1S4Xq12lV9TGmPogBg0/8No9q3XZ+CQwGAcsfVvTNv087simpbekdqzPSFTs dovfgCw+mahw6qbfHduSRQ3c0Iycz9E0zqT6SF1MNKADEkH2FnVfBczaP281rjKyDleENM 7CCpce8okmzpslxyE5ojQQ0qvLf8zdM/sAnEoEBRYlehba5+YT0qi6SROfjfdQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from beefy4.nyi.freebsd.org (beefy4.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:13]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4RVbbp5nDCz1B77 for ; Tue, 22 Aug 2023 17:16:22 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 8638 by beefy4.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy4.nyi.freebsd.org); Tue, 22 Aug 2023 17:16:22 +0000 To: yuri@FreeBSD.org Subject: [package - 124i386-quarterly][biology/py-scikit-bio] Failed for py39-scikit-bio-0.5.8_1 in build Cc: pkg-fallout@FreeBSD.org Date: Tue, 22 Aug 2023 17:16:22 +0000 Message-Id: <64e4ed66.8638.24baeea3@beefy4.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@freebsd.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy4/data/124i386-quarterly/f3d8c4bf5c40/logs/py39-scikit-bio-0.5.8_1.log Build URL: https://pkg-status.freebsd.org/beefy4/build.html?mastername=124i386-quarterly&build=f3d8c4bf5c40 Log: =>> Building biology/py-scikit-bio build started at Tue Aug 22 17:15:56 UTC 2023 port directory: /usr/ports/biology/py-scikit-bio package name: py39-scikit-bio-0.5.8_1 building for: FreeBSD 124i386-quarterly-job-06 12.4-RELEASE-p4 FreeBSD 12.4-RELEASE-p4 i386 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400089 Jail OSVERSION: 1204000 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1204000 UNAME_v=FreeBSD 12.4-RELEASE-p4 UNAME_r=12.4-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/124i386-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/124i386-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=124i386-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/124i386-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-scikit-bio/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -msse2 -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -msse2 -fstack-protector-strong -fno-strict-aliasing -msse2 " MANPR EFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=12.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/scikit-bio" EXAMPLESDIR="share/examples/scikit-bio" DATADIR="share/scikit-bio" WWWDIR="www/scikit-bio" ETCDIR="etc/scikit-bio" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-bio DOCSDIR=/usr/local/share/doc/scikit-bio EXAMPLESDIR=/usr/local/share/examples/scikit-bio WWWDIR=/usr/local/www/scikit-bio ETCDIR=/usr/local/etc/scikit-bio --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 (git@github.com:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: i386-unknown-freebsd12.4 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=12.4-RELEASE-p4 OSREL=12.4 OSVERSION=1204000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> py39-scikit-bio-0.5.8_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.2.pkg [124i386-quarterly-job-06] Installing pkg-1.19.2... [124i386-quarterly-job-06] Extracting pkg-1.19.2: .......... done ===> py39-scikit-bio-0.5.8_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-scikit-bio-0.5.8_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scikit-bio-0.5.8_1 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scikit-bio-0.5.8_1 for building => SHA256 Checksum OK for scikit-bio-0.5.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scikit-bio-0.5.8_1 for building ===> Extracting for py39-scikit-bio-0.5.8_1 => SHA256 Checksum OK for scikit-bio-0.5.8.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py39-scikit-bio-0.5.8_1 =========================================================================== =================================================== ===> py39-scikit-bio-0.5.8_1 depends on package: py39-numpy>=1.16,1<1.25,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.24.1_4,1.pkg [124i386-quarterly-job-06] Installing py39-numpy-1.24.1_4,1... [124i386-quarterly-job-06] `-- Installing gcc12-12.2.0_6... [124i386-quarterly-job-06] | `-- Installing binutils-2.40_4,1... [124i386-quarterly-job-06] | | `-- Installing gettext-runtime-0.21.1... [124i386-quarterly-job-06] | | `-- Installing indexinfo-0.3.1... [124i386-quarterly-job-06] | | `-- Extracting indexinfo-0.3.1: .... done [124i386-quarterly-job-06] | | `-- Extracting gettext-runtime-0.21.1: .......... done [124i386-quarterly-job-06] | | `-- Installing zstd-1.5.5... [124i386-quarterly-job-06] | | `-- Installing liblz4-1.9.4,1... [124i386-quarterly-job-06] | | `-- Extracting liblz4-1.9.4,1: .......... done [124i386-quarterly-job-06] | | `-- Extracting zstd-1.5.5: .......... done copying skbio/io/format/tests/data/embl_constructed -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_multi_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_single_record -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_rna -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/empty -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/io/format/tests/data running build_ext building 'skbio.metadata._intersection' extension creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39 creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio creating build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/metadata cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -msse2 -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c skbio/metadata/_intersection.c -o build/temp.freebsd-12.4-RELEASE-p4-i386-cpython-39/skbio/metadata/_intersection.o error: command '/usr/bin/cc' failed with exit code -10 *** Error code 1 Stop. make: stopped in /usr/ports/biology/py-scikit-bio