git: 41b83c53f848 - main - biology/abyss: update 2.3.9 → 2.3.10

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From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Mon, 04 Nov 2024 20:37:05 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=41b83c53f848efe88b7771432e482f243c0eab43

commit 41b83c53f848efe88b7771432e482f243c0eab43
Author:     Älven <alster@vinterdalen.se>
AuthorDate: 2024-11-04 20:35:32 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2024-11-04 20:36:54 +0000

    biology/abyss: update 2.3.9 → 2.3.10
    
    PR:     282540
---
 biology/abyss/Makefile | 13 +++++++------
 biology/abyss/distinfo |  6 +++---
 2 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile
index 9f4072a59815..866362583846 100644
--- a/biology/abyss/Makefile
+++ b/biology/abyss/Makefile
@@ -1,10 +1,10 @@
 PORTNAME=	abyss
-DISTVERSION=	2.3.9
+DISTVERSION=	2.3.10
 CATEGORIES=	biology
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Assembly By Short Sequences: parallel, paired-end sequence assembler
-WWW=		https://www.bcgsc.ca/resources/software/abyss
+WWW=		https://www.bcgsc.ca/resources/software/abyss/
 
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKSRC}/LICENSE
@@ -33,15 +33,16 @@ make_CMD=	${PREFIX}/bin/gmake
 
 GNU_CONFIGURE=	yes
 CONFIGURE_ARGS=	--without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs
-GNU_CONFIGURE_MANPREFIX=	${PREFIX}/share
 
-TEST_TARGET=	check # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453
+TEST_TARGET=	check
 
-OPTIONS_DEFINE=	DOCS
+PORTSCOUT=	limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
 
 PORTDOCS=	*
 
-PORTSCOUT=	limit:^[0-9\.]*$$ # to ignore alpha-numeric tags
+OPTIONS_DEFINE=	DOCS
+
+TESTING_UNSAFE=	yes # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453
 
 .include <bsd.port.pre.mk>
 
diff --git a/biology/abyss/distinfo b/biology/abyss/distinfo
index c57848eae017..9846a81f350c 100644
--- a/biology/abyss/distinfo
+++ b/biology/abyss/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1726117023
-SHA256 (bcgsc-abyss-2.3.9_GH0.tar.gz) = 68e0bb05526a1daaeea91e036fb227e7adde938fa2eeaa7c7225997c00e367d5
-SIZE (bcgsc-abyss-2.3.9_GH0.tar.gz) = 1323783
+TIMESTAMP = 1730727252
+SHA256 (bcgsc-abyss-2.3.10_GH0.tar.gz) = 08ff30002113280ae75228eb1e29cf835318c7ef783ccf24fbe7350d49b4043c
+SIZE (bcgsc-abyss-2.3.10_GH0.tar.gz) = 1323490