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Mon, 4 Nov 2024 20:37:05 GMT (envelope-from git) Date: Mon, 4 Nov 2024 20:37:05 GMT Message-Id: <202411042037.4A4Kb5Gw094194@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 41b83c53f848 - main - biology/abyss: update 2.3.9 =?utf-8?Q?=E2=86=92?= 2.3.10 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 41b83c53f848efe88b7771432e482f243c0eab43 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=41b83c53f848efe88b7771432e482f243c0eab43 commit 41b83c53f848efe88b7771432e482f243c0eab43 Author: Älven AuthorDate: 2024-11-04 20:35:32 +0000 Commit: Yuri Victorovich CommitDate: 2024-11-04 20:36:54 +0000 biology/abyss: update 2.3.9 → 2.3.10 PR: 282540 --- biology/abyss/Makefile | 13 +++++++------ biology/abyss/distinfo | 6 +++--- 2 files changed, 10 insertions(+), 9 deletions(-) diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile index 9f4072a59815..866362583846 100644 --- a/biology/abyss/Makefile +++ b/biology/abyss/Makefile @@ -1,10 +1,10 @@ PORTNAME= abyss -DISTVERSION= 2.3.9 +DISTVERSION= 2.3.10 CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org COMMENT= Assembly By Short Sequences: parallel, paired-end sequence assembler -WWW= https://www.bcgsc.ca/resources/software/abyss +WWW= https://www.bcgsc.ca/resources/software/abyss/ LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE @@ -33,15 +33,16 @@ make_CMD= ${PREFIX}/bin/gmake GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs -GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share -TEST_TARGET= check # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453 +TEST_TARGET= check -OPTIONS_DEFINE= DOCS +PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags PORTDOCS= * -PORTSCOUT= limit:^[0-9\.]*$$ # to ignore alpha-numeric tags +OPTIONS_DEFINE= DOCS + +TESTING_UNSAFE= yes # tests fail to compile, see https://github.com/bcgsc/abyss/issues/453 .include diff --git a/biology/abyss/distinfo b/biology/abyss/distinfo index c57848eae017..9846a81f350c 100644 --- a/biology/abyss/distinfo +++ b/biology/abyss/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1726117023 -SHA256 (bcgsc-abyss-2.3.9_GH0.tar.gz) = 68e0bb05526a1daaeea91e036fb227e7adde938fa2eeaa7c7225997c00e367d5 -SIZE (bcgsc-abyss-2.3.9_GH0.tar.gz) = 1323783 +TIMESTAMP = 1730727252 +SHA256 (bcgsc-abyss-2.3.10_GH0.tar.gz) = 08ff30002113280ae75228eb1e29cf835318c7ef783ccf24fbe7350d49b4043c +SIZE (bcgsc-abyss-2.3.10_GH0.tar.gz) = 1323490