git: d3367118d8c5 - main - science/nest: Update 3.3 → 3.4

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From: Yuri Victorovich <yuri_at_FreeBSD.org>
Date: Sat, 01 Jul 2023 08:22:01 UTC
The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=d3367118d8c546d590fe9d298d1bb8c50bd4c776

commit d3367118d8c546d590fe9d298d1bb8c50bd4c776
Author:     Yuri Victorovich <yuri@FreeBSD.org>
AuthorDate: 2023-07-01 08:21:49 +0000
Commit:     Yuri Victorovich <yuri@FreeBSD.org>
CommitDate: 2023-07-01 08:21:49 +0000

    science/nest: Update 3.3 → 3.4
    
    Reported by:    portscout
---
 science/nest/Makefile                   |  4 ++--
 science/nest/distinfo                   |  6 +++---
 science/nest/files/patch-CMakeLists.txt | 17 ++++-------------
 science/nest/pkg-plist                  | 30 ++++++++++++++++++++++++++----
 4 files changed, 35 insertions(+), 22 deletions(-)

diff --git a/science/nest/Makefile b/science/nest/Makefile
index 13699df09d9e..5b451e3e25f5 100644
--- a/science/nest/Makefile
+++ b/science/nest/Makefile
@@ -1,7 +1,6 @@
 PORTNAME=	nest
 DISTVERSIONPREFIX=	v
-DISTVERSION=	3.3
-PORTREVISION=	2
+DISTVERSION=	3.4
 CATEGORIES=	science biology # NEST is used in neuroscience
 
 MAINTAINER=	yuri@FreeBSD.org
@@ -44,6 +43,7 @@ USES+=		compiler:c++11-lang
 
 # 2 tests are known to fail, see https://github.com/nest/nest-simulator/issues/2190
 # tests require the port to be installed with DOCS=ON, see https://github.com/nest/nest-simulator/issues/2191
+# many tests fail, see https://github.com/nest/nest-simulator/issues/2848
 
 post-install:
 	@${REINPLACE_CMD} -i '' -e 's|^python3 |${PYTHON_CMD} |' ${STAGEDIR}${PREFIX}/share/nest/testsuite/do_tests.sh
diff --git a/science/nest/distinfo b/science/nest/distinfo
index 8e0f61ae1571..7e25a95f0b3d 100644
--- a/science/nest/distinfo
+++ b/science/nest/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1652029146
-SHA256 (nest-nest-simulator-v3.3_GH0.tar.gz) = 179462b966cc61f5785d2fee770bc36f86745598ace9cd97dd620622b62043ed
-SIZE (nest-nest-simulator-v3.3_GH0.tar.gz) = 11081653
+TIMESTAMP = 1688198308
+SHA256 (nest-nest-simulator-v3.4_GH0.tar.gz) = c56699111f899045ba48e55e87d14eca8763b48ebbb3648beee701a36aa3af20
+SIZE (nest-nest-simulator-v3.4_GH0.tar.gz) = 24985676
diff --git a/science/nest/files/patch-CMakeLists.txt b/science/nest/files/patch-CMakeLists.txt
index c77579033a51..919ae30612a7 100644
--- a/science/nest/files/patch-CMakeLists.txt
+++ b/science/nest/files/patch-CMakeLists.txt
@@ -1,15 +1,6 @@
---- CMakeLists.txt.orig	2022-01-21 18:01:36 UTC
+--- CMakeLists.txt.orig	2023-02-16 13:40:33 UTC
 +++ CMakeLists.txt
-@@ -100,7 +100,7 @@ set( CMAKE_INSTALL_DATADIR "share/${PROJECT_NAME}" CAC
- ################################################################################
- 
- # needed for pynest test suite
--if ( ${with-python} STREQUAL "ON" )
-+if ( BUILD_PYTHON AND ${with-python} STREQUAL "ON" )
-   find_program( NOSETESTS NAMES nosetests )
- endif ()
- 
-@@ -202,7 +202,7 @@ message("-- NEST version: ${NEST_VERSION_STRING}")
+@@ -197,7 +197,7 @@ printInfo("-- NEST version: ${NEST_VERSION_STRING}")
  enable_testing()
  set( TEST_OPTS "" )
  
@@ -18,7 +9,7 @@
    set( TEST_OPTS "${TEST_OPTS};--with-python=${PYTHON}" )
  endif ()
  
-@@ -231,9 +231,13 @@ add_custom_target( installcheck
+@@ -226,9 +226,13 @@ add_custom_target( installcheck
  ##################        Define Subdirectories here          ##################
  ################################################################################
  
@@ -32,7 +23,7 @@
  add_subdirectory( build_support )
  add_subdirectory( lib )
  add_subdirectory( libnestutil )
-@@ -243,7 +247,7 @@ add_subdirectory( nest )
+@@ -238,7 +242,7 @@ add_subdirectory( nest )
  add_subdirectory( nestkernel )
  add_subdirectory( thirdparty )
  add_subdirectory( testsuite )
diff --git a/science/nest/pkg-plist b/science/nest/pkg-plist
index 0e532d4841f8..9f7159c4bee6 100644
--- a/science/nest/pkg-plist
+++ b/science/nest/pkg-plist
@@ -143,6 +143,7 @@ include/nest/iaf_cond_alpha_mc.h
 include/nest/iaf_cond_beta.h
 include/nest/iaf_cond_exp.h
 include/nest/iaf_cond_exp_sfa_rr.h
+include/nest/iaf_propagator.h
 include/nest/iaf_psc_alpha.h
 include/nest/iaf_psc_alpha_multisynapse.h
 include/nest/iaf_psc_alpha_ps.h
@@ -226,11 +227,9 @@ include/nest/poisson_generator.h
 include/nest/poisson_generator_ps.h
 include/nest/position.h
 include/nest/pp_cond_exp_mc_urbanczik.h
-include/nest/pp_pop_psc_delta.h
 include/nest/pp_psc_delta.h
 include/nest/ppd_sup_generator.h
 include/nest/processes.h
-include/nest/propagator_stability.h
 include/nest/proxynode.h
 include/nest/pseudo_recording_device.h
 include/nest/pulsepacket_generator.h
@@ -257,6 +256,7 @@ include/nest/regula_falsi.h
 include/nest/ring_buffer.h
 include/nest/ring_buffer_impl.h
 include/nest/scanner.h
+include/nest/secondary_event.h
 include/nest/send_buffer_position.h
 include/nest/sharedptrdatum.h
 include/nest/siegert_neuron.h
@@ -355,11 +355,23 @@ include/nest/vp_manager.h
 include/nest/vp_manager_impl.h
 include/nest/weight_recorder.h
 lib/nest/libmodels.so
+lib/nest/libmodels.so.3
+lib/nest/libmodels.so.3.4
 lib/nest/libnest.so
+lib/nest/libnest.so.3
+lib/nest/libnest.so.3.4
 lib/nest/libnestkernel.so
+lib/nest/libnestkernel.so.3
+lib/nest/libnestkernel.so.3.4
 lib/nest/libnestutil.so
+lib/nest/libnestutil.so.3
+lib/nest/libnestutil.so.3.4
 lib/nest/libsli.so
+lib/nest/libsli.so.3
+lib/nest/libsli.so.3.4
 lib/nest/libsli_readline.so
+lib/nest/libsli_readline.so.3
+lib/nest/libsli_readline.so.3.4
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/nest/__init__.py
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/nest/lib/README.md
 %%PYTHON%%%%PYTHON_SITELIBDIR%%/nest/lib/__init__.py
@@ -446,6 +458,7 @@ lib/nest/libsli_readline.so
 %%DATADIR%%/testsuite/mpitests/CMakeLists.txt
 %%DATADIR%%/testsuite/mpitests/README
 %%DATADIR%%/testsuite/mpitests/issue-1957.sli
+%%DATADIR%%/testsuite/mpitests/issue-1974.sli
 %%DATADIR%%/testsuite/mpitests/issue-2119.sli
 %%DATADIR%%/testsuite/mpitests/issue-281.sli
 %%DATADIR%%/testsuite/mpitests/issue-600.sli
@@ -519,8 +532,14 @@ lib/nest/libsli_readline.so
 %%DATADIR%%/testsuite/musictests/test_event_proxies_issue-696_sender.sli
 %%DATADIR%%/testsuite/musictests/test_event_proxies_receiver.sli
 %%DATADIR%%/testsuite/musictests/test_event_proxies_sender.sli
+%%DATADIR%%/testsuite/musictests/test_message.music
+%%DATADIR%%/testsuite/musictests/test_message0.dat
+%%DATADIR%%/testsuite/musictests/test_message_receiver.sli
 %%DATADIR%%/testsuite/musictests/test_music_failure1.music
 %%DATADIR%%/testsuite/musictests/test_music_failure2.music
+%%DATADIR%%/testsuite/musictests/test_rate_proxy.music
+%%DATADIR%%/testsuite/musictests/test_rate_proxy_receiver.sli
+%%DATADIR%%/testsuite/musictests/test_rate_proxy_sender.sli
 %%DATADIR%%/testsuite/pytests/connect_test_base.py
 %%DATADIR%%/testsuite/pytests/mpi/2/connect_test_base.py
 %%DATADIR%%/testsuite/pytests/mpi/2/test_connect_all_to_all.py
@@ -555,6 +574,7 @@ lib/nest/libsli_readline.so
 %%DATADIR%%/testsuite/pytests/test_connect_one_to_one.py
 %%DATADIR%%/testsuite/pytests/test_connect_pairwise_bernoulli.py
 %%DATADIR%%/testsuite/pytests/test_connect_symmetric_pairwise_bernoulli.py
+%%DATADIR%%/testsuite/pytests/test_copy_model.py
 %%DATADIR%%/testsuite/pytests/test_create.py
 %%DATADIR%%/testsuite/pytests/test_current_recording_generators.py
 %%DATADIR%%/testsuite/pytests/test_erfc_neuron.py
@@ -567,6 +587,7 @@ lib/nest/libsli_readline.so
 %%DATADIR%%/testsuite/pytests/test_glif_cond.py
 %%DATADIR%%/testsuite/pytests/test_glif_psc.py
 %%DATADIR%%/testsuite/pytests/test_helper_functions.py
+%%DATADIR%%/testsuite/pytests/test_iaf_singularity.py
 %%DATADIR%%/testsuite/pytests/test_jonke_synapse.py
 %%DATADIR%%/testsuite/pytests/test_json.py
 %%DATADIR%%/testsuite/pytests/test_labeled_synapses.py
@@ -595,6 +616,7 @@ lib/nest/libsli_readline.so
 %%DATADIR%%/testsuite/pytests/test_regression_issue-1409.py
 %%DATADIR%%/testsuite/pytests/test_regression_issue-2069.py
 %%DATADIR%%/testsuite/pytests/test_regression_issue-2125.py
+%%DATADIR%%/testsuite/pytests/test_regression_issue-2480.py
 %%DATADIR%%/testsuite/pytests/test_siegert_neuron.py
 %%DATADIR%%/testsuite/pytests/test_sp/test_conn_builder.py
 %%DATADIR%%/testsuite/pytests/test_sp/test_disconnect.py
@@ -646,7 +668,9 @@ lib/nest/libsli_readline.so
 %%DATADIR%%/testsuite/regressiontests/issue-1610.sli
 %%DATADIR%%/testsuite/regressiontests/issue-1640.sli
 %%DATADIR%%/testsuite/regressiontests/issue-1703.py
+%%DATADIR%%/testsuite/regressiontests/issue-2052.sli
 %%DATADIR%%/testsuite/regressiontests/issue-211.sli
+%%DATADIR%%/testsuite/regressiontests/issue-2282.sli
 %%DATADIR%%/testsuite/regressiontests/issue-264.sli
 %%DATADIR%%/testsuite/regressiontests/issue-311.sli
 %%DATADIR%%/testsuite/regressiontests/issue-327.sli
@@ -722,7 +746,6 @@ lib/nest/libsli_readline.so
 %%DATADIR%%/testsuite/regressiontests/ticket-903.sli
 %%DATADIR%%/testsuite/regressiontests/ticket-921.sli
 %%DATADIR%%/testsuite/regressiontests/ticket-926.sli
-%%DATADIR%%/testsuite/regressiontests/ticket-933.sli
 %%DATADIR%%/testsuite/regressiontests/ticket-941.sli
 %%DATADIR%%/testsuite/regressiontests/ticket-949.sli
 %%DATADIR%%/testsuite/regressiontests/ticket-959.sli
@@ -864,7 +887,6 @@ lib/nest/libsli_readline.so
 %%DATADIR%%/testsuite/unittests/test_poisson_generator_ps.sli
 %%DATADIR%%/testsuite/unittests/test_poisson_ps_intervals.sli
 %%DATADIR%%/testsuite/unittests/test_poisson_ps_min_interval.sli
-%%DATADIR%%/testsuite/unittests/test_pp_pop_psc_delta.sli
 %%DATADIR%%/testsuite/unittests/test_pp_psc_delta.sli
 %%DATADIR%%/testsuite/unittests/test_ppd_sup_generator.sli
 %%DATADIR%%/testsuite/unittests/test_psp_amplitude_consistency.sli