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ESMTPS id 4QtQCF1pzJzJVV; Sat, 1 Jul 2023 08:22:01 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 3618M1hO074550; Sat, 1 Jul 2023 08:22:01 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 3618M1xE074549; Sat, 1 Jul 2023 08:22:01 GMT (envelope-from git) Date: Sat, 1 Jul 2023 08:22:01 GMT Message-Id: <202307010822.3618M1xE074549@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: d3367118d8c5 - main - =?utf-8?Q?science/nest:=20Update=203.3=20=E2=86=92=203.4?= List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: d3367118d8c546d590fe9d298d1bb8c50bd4c776 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=d3367118d8c546d590fe9d298d1bb8c50bd4c776 commit d3367118d8c546d590fe9d298d1bb8c50bd4c776 Author: Yuri Victorovich AuthorDate: 2023-07-01 08:21:49 +0000 Commit: Yuri Victorovich CommitDate: 2023-07-01 08:21:49 +0000 science/nest: Update 3.3 → 3.4 Reported by: portscout --- science/nest/Makefile | 4 ++-- science/nest/distinfo | 6 +++--- science/nest/files/patch-CMakeLists.txt | 17 ++++------------- science/nest/pkg-plist | 30 ++++++++++++++++++++++++++---- 4 files changed, 35 insertions(+), 22 deletions(-) diff --git a/science/nest/Makefile b/science/nest/Makefile index 13699df09d9e..5b451e3e25f5 100644 --- a/science/nest/Makefile +++ b/science/nest/Makefile @@ -1,7 +1,6 @@ PORTNAME= nest DISTVERSIONPREFIX= v -DISTVERSION= 3.3 -PORTREVISION= 2 +DISTVERSION= 3.4 CATEGORIES= science biology # NEST is used in neuroscience MAINTAINER= yuri@FreeBSD.org @@ -44,6 +43,7 @@ USES+= compiler:c++11-lang # 2 tests are known to fail, see https://github.com/nest/nest-simulator/issues/2190 # tests require the port to be installed with DOCS=ON, see https://github.com/nest/nest-simulator/issues/2191 +# many tests fail, see https://github.com/nest/nest-simulator/issues/2848 post-install: @${REINPLACE_CMD} -i '' -e 's|^python3 |${PYTHON_CMD} |' ${STAGEDIR}${PREFIX}/share/nest/testsuite/do_tests.sh diff --git a/science/nest/distinfo b/science/nest/distinfo index 8e0f61ae1571..7e25a95f0b3d 100644 --- a/science/nest/distinfo +++ b/science/nest/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1652029146 -SHA256 (nest-nest-simulator-v3.3_GH0.tar.gz) = 179462b966cc61f5785d2fee770bc36f86745598ace9cd97dd620622b62043ed -SIZE (nest-nest-simulator-v3.3_GH0.tar.gz) = 11081653 +TIMESTAMP = 1688198308 +SHA256 (nest-nest-simulator-v3.4_GH0.tar.gz) = c56699111f899045ba48e55e87d14eca8763b48ebbb3648beee701a36aa3af20 +SIZE (nest-nest-simulator-v3.4_GH0.tar.gz) = 24985676 diff --git a/science/nest/files/patch-CMakeLists.txt b/science/nest/files/patch-CMakeLists.txt index c77579033a51..919ae30612a7 100644 --- a/science/nest/files/patch-CMakeLists.txt +++ b/science/nest/files/patch-CMakeLists.txt @@ -1,15 +1,6 @@ ---- CMakeLists.txt.orig 2022-01-21 18:01:36 UTC +--- CMakeLists.txt.orig 2023-02-16 13:40:33 UTC +++ CMakeLists.txt -@@ -100,7 +100,7 @@ set( CMAKE_INSTALL_DATADIR "share/${PROJECT_NAME}" CAC - ################################################################################ - - # needed for pynest test suite --if ( ${with-python} STREQUAL "ON" ) -+if ( BUILD_PYTHON AND ${with-python} STREQUAL "ON" ) - find_program( NOSETESTS NAMES nosetests ) - endif () - -@@ -202,7 +202,7 @@ message("-- NEST version: ${NEST_VERSION_STRING}") +@@ -197,7 +197,7 @@ printInfo("-- NEST version: ${NEST_VERSION_STRING}") enable_testing() set( TEST_OPTS "" ) @@ -18,7 +9,7 @@ set( TEST_OPTS "${TEST_OPTS};--with-python=${PYTHON}" ) endif () -@@ -231,9 +231,13 @@ add_custom_target( installcheck +@@ -226,9 +226,13 @@ add_custom_target( installcheck ################## Define Subdirectories here ################## ################################################################################ @@ -32,7 +23,7 @@ add_subdirectory( build_support ) add_subdirectory( lib ) add_subdirectory( libnestutil ) -@@ -243,7 +247,7 @@ add_subdirectory( nest ) +@@ -238,7 +242,7 @@ add_subdirectory( nest ) add_subdirectory( nestkernel ) add_subdirectory( thirdparty ) add_subdirectory( testsuite ) diff --git a/science/nest/pkg-plist b/science/nest/pkg-plist index 0e532d4841f8..9f7159c4bee6 100644 --- a/science/nest/pkg-plist +++ b/science/nest/pkg-plist @@ -143,6 +143,7 @@ include/nest/iaf_cond_alpha_mc.h include/nest/iaf_cond_beta.h include/nest/iaf_cond_exp.h include/nest/iaf_cond_exp_sfa_rr.h +include/nest/iaf_propagator.h include/nest/iaf_psc_alpha.h include/nest/iaf_psc_alpha_multisynapse.h include/nest/iaf_psc_alpha_ps.h @@ -226,11 +227,9 @@ include/nest/poisson_generator.h include/nest/poisson_generator_ps.h include/nest/position.h include/nest/pp_cond_exp_mc_urbanczik.h -include/nest/pp_pop_psc_delta.h include/nest/pp_psc_delta.h include/nest/ppd_sup_generator.h include/nest/processes.h -include/nest/propagator_stability.h include/nest/proxynode.h include/nest/pseudo_recording_device.h include/nest/pulsepacket_generator.h @@ -257,6 +256,7 @@ include/nest/regula_falsi.h include/nest/ring_buffer.h include/nest/ring_buffer_impl.h include/nest/scanner.h +include/nest/secondary_event.h include/nest/send_buffer_position.h include/nest/sharedptrdatum.h include/nest/siegert_neuron.h @@ -355,11 +355,23 @@ include/nest/vp_manager.h include/nest/vp_manager_impl.h include/nest/weight_recorder.h lib/nest/libmodels.so +lib/nest/libmodels.so.3 +lib/nest/libmodels.so.3.4 lib/nest/libnest.so +lib/nest/libnest.so.3 +lib/nest/libnest.so.3.4 lib/nest/libnestkernel.so +lib/nest/libnestkernel.so.3 +lib/nest/libnestkernel.so.3.4 lib/nest/libnestutil.so +lib/nest/libnestutil.so.3 +lib/nest/libnestutil.so.3.4 lib/nest/libsli.so +lib/nest/libsli.so.3 +lib/nest/libsli.so.3.4 lib/nest/libsli_readline.so +lib/nest/libsli_readline.so.3 +lib/nest/libsli_readline.so.3.4 %%PYTHON%%%%PYTHON_SITELIBDIR%%/nest/__init__.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/nest/lib/README.md %%PYTHON%%%%PYTHON_SITELIBDIR%%/nest/lib/__init__.py @@ -446,6 +458,7 @@ lib/nest/libsli_readline.so %%DATADIR%%/testsuite/mpitests/CMakeLists.txt %%DATADIR%%/testsuite/mpitests/README %%DATADIR%%/testsuite/mpitests/issue-1957.sli +%%DATADIR%%/testsuite/mpitests/issue-1974.sli %%DATADIR%%/testsuite/mpitests/issue-2119.sli %%DATADIR%%/testsuite/mpitests/issue-281.sli %%DATADIR%%/testsuite/mpitests/issue-600.sli @@ -519,8 +532,14 @@ lib/nest/libsli_readline.so %%DATADIR%%/testsuite/musictests/test_event_proxies_issue-696_sender.sli %%DATADIR%%/testsuite/musictests/test_event_proxies_receiver.sli %%DATADIR%%/testsuite/musictests/test_event_proxies_sender.sli +%%DATADIR%%/testsuite/musictests/test_message.music +%%DATADIR%%/testsuite/musictests/test_message0.dat +%%DATADIR%%/testsuite/musictests/test_message_receiver.sli %%DATADIR%%/testsuite/musictests/test_music_failure1.music %%DATADIR%%/testsuite/musictests/test_music_failure2.music +%%DATADIR%%/testsuite/musictests/test_rate_proxy.music +%%DATADIR%%/testsuite/musictests/test_rate_proxy_receiver.sli +%%DATADIR%%/testsuite/musictests/test_rate_proxy_sender.sli %%DATADIR%%/testsuite/pytests/connect_test_base.py %%DATADIR%%/testsuite/pytests/mpi/2/connect_test_base.py %%DATADIR%%/testsuite/pytests/mpi/2/test_connect_all_to_all.py @@ -555,6 +574,7 @@ lib/nest/libsli_readline.so %%DATADIR%%/testsuite/pytests/test_connect_one_to_one.py %%DATADIR%%/testsuite/pytests/test_connect_pairwise_bernoulli.py %%DATADIR%%/testsuite/pytests/test_connect_symmetric_pairwise_bernoulli.py +%%DATADIR%%/testsuite/pytests/test_copy_model.py %%DATADIR%%/testsuite/pytests/test_create.py %%DATADIR%%/testsuite/pytests/test_current_recording_generators.py %%DATADIR%%/testsuite/pytests/test_erfc_neuron.py @@ -567,6 +587,7 @@ lib/nest/libsli_readline.so %%DATADIR%%/testsuite/pytests/test_glif_cond.py %%DATADIR%%/testsuite/pytests/test_glif_psc.py %%DATADIR%%/testsuite/pytests/test_helper_functions.py +%%DATADIR%%/testsuite/pytests/test_iaf_singularity.py %%DATADIR%%/testsuite/pytests/test_jonke_synapse.py %%DATADIR%%/testsuite/pytests/test_json.py %%DATADIR%%/testsuite/pytests/test_labeled_synapses.py @@ -595,6 +616,7 @@ lib/nest/libsli_readline.so %%DATADIR%%/testsuite/pytests/test_regression_issue-1409.py %%DATADIR%%/testsuite/pytests/test_regression_issue-2069.py %%DATADIR%%/testsuite/pytests/test_regression_issue-2125.py +%%DATADIR%%/testsuite/pytests/test_regression_issue-2480.py %%DATADIR%%/testsuite/pytests/test_siegert_neuron.py %%DATADIR%%/testsuite/pytests/test_sp/test_conn_builder.py %%DATADIR%%/testsuite/pytests/test_sp/test_disconnect.py @@ -646,7 +668,9 @@ lib/nest/libsli_readline.so %%DATADIR%%/testsuite/regressiontests/issue-1610.sli %%DATADIR%%/testsuite/regressiontests/issue-1640.sli %%DATADIR%%/testsuite/regressiontests/issue-1703.py +%%DATADIR%%/testsuite/regressiontests/issue-2052.sli %%DATADIR%%/testsuite/regressiontests/issue-211.sli +%%DATADIR%%/testsuite/regressiontests/issue-2282.sli %%DATADIR%%/testsuite/regressiontests/issue-264.sli %%DATADIR%%/testsuite/regressiontests/issue-311.sli %%DATADIR%%/testsuite/regressiontests/issue-327.sli @@ -722,7 +746,6 @@ lib/nest/libsli_readline.so %%DATADIR%%/testsuite/regressiontests/ticket-903.sli %%DATADIR%%/testsuite/regressiontests/ticket-921.sli %%DATADIR%%/testsuite/regressiontests/ticket-926.sli -%%DATADIR%%/testsuite/regressiontests/ticket-933.sli %%DATADIR%%/testsuite/regressiontests/ticket-941.sli %%DATADIR%%/testsuite/regressiontests/ticket-949.sli %%DATADIR%%/testsuite/regressiontests/ticket-959.sli @@ -864,7 +887,6 @@ lib/nest/libsli_readline.so %%DATADIR%%/testsuite/unittests/test_poisson_generator_ps.sli %%DATADIR%%/testsuite/unittests/test_poisson_ps_intervals.sli %%DATADIR%%/testsuite/unittests/test_poisson_ps_min_interval.sli -%%DATADIR%%/testsuite/unittests/test_pp_pop_psc_delta.sli %%DATADIR%%/testsuite/unittests/test_pp_psc_delta.sli %%DATADIR%%/testsuite/unittests/test_ppd_sup_generator.sli %%DATADIR%%/testsuite/unittests/test_psp_amplitude_consistency.sli