svn commit: r554660 - in head/biology/vt: . files

[Jason W. Bacon]

Author: jwb
Date: Mon Nov  9 00:35:58 2020
New Revision: 554660
URL: https://svnweb.freebsd.org/changeset/ports/554660

Log:
  biology/vt: Fix build with htslib 1.11
  
  Reported by:    fallout

Added:
  head/biology/vt/files/patch-hts__utils.h   (contents, props changed)
Modified:
  head/biology/vt/Makefile

Modified: head/biology/vt/Makefile
==============================================================================
--- head/biology/vt/Makefile	Sun Nov  8 23:42:10 2020	(r554659)
+++ head/biology/vt/Makefile	Mon Nov  9 00:35:58 2020	(r554660)
@@ -2,7 +2,7 @@
 
 PORTNAME=	vt
 DISTVERSION=	0.57721
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 
 MAINTAINER=	jwb at FreeBSD.org
@@ -10,7 +10,7 @@ COMMENT=	Discovers short variants from Next Generation
 
 LICENSE=	MIT
 
-LIB_DEPENDS=	libhts.so.3:biology/htslib \
+LIB_DEPENDS=	libhts.so:biology/htslib \
 		libsvm.so:science/libsvm \
 		libdeflate.so:archivers/libdeflate \
 		libcurl.so:ftp/curl

Added: head/biology/vt/files/patch-hts__utils.h
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/vt/files/patch-hts__utils.h	Mon Nov  9 00:35:58 2020	(r554660)
@@ -0,0 +1,11 @@
+--- hts_utils.h.orig	2020-11-08 22:09:58 UTC
++++ hts_utils.h
+@@ -47,7 +47,7 @@ typedef struct {
+ 
+ KHASH_MAP_INIT_STR(s, faidx1_t)
+ 
+-struct __faidx_t {
++struct faidx_t {
+     BGZF *bgzf;
+     int n, m;
+     char **name;