svn commit: r535339 - in head/biology: . py-ete3

[Yuri Victorovich]

Author: yuri
Date: Sat May 16 00:13:09 2020
New Revision: 535339
URL: https://svnweb.freebsd.org/changeset/ports/535339

Log:
  New port: biology/py-ete3: Framework for the analysis and visualization of trees

Added:
  head/biology/py-ete3/
  head/biology/py-ete3/Makefile   (contents, props changed)
  head/biology/py-ete3/distinfo   (contents, props changed)
  head/biology/py-ete3/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Fri May 15 22:28:02 2020	(r535338)
+++ head/biology/Makefile	Sat May 16 00:13:09 2020	(r535339)
@@ -125,6 +125,7 @@
     SUBDIR += py-bx-python
     SUBDIR += py-cutadapt
     SUBDIR += py-dnaio
+    SUBDIR += py-ete3
     SUBDIR += py-fastTSNE
     SUBDIR += py-gffutils
     SUBDIR += py-gtfparse

Added: head/biology/py-ete3/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-ete3/Makefile	Sat May 16 00:13:09 2020	(r535339)
@@ -0,0 +1,28 @@
+# $FreeBSD$
+
+PORTNAME=	ete3
+DISTVERSION=	3.1.1
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Framework for the analysis and visualization of trees
+
+LICENSE=	GPLv3
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+PY_DEPENDS=	${PYNUMPY} \
+		${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}
+BUILD_DEPENDS=	${PY_DEPENDS}
+RUN_DEPENDS=	${PY_DEPENDS}
+
+USES=		python pyqt:5 shebangfix
+SHEBANG_GLOB=	*.py
+USE_PYTHON=	distutils concurrent autoplist
+USE_PYQT=	core gui opengl printsupport svg widgets
+
+NO_ARCH=	yes
+
+.include <bsd.port.mk>

Added: head/biology/py-ete3/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-ete3/distinfo	Sat May 16 00:13:09 2020	(r535339)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1589570291
+SHA256 (ete3-3.1.1.tar.gz) = 870a3d4b496a36fbda4b13c7c6b9dfa7638384539ae93551ec7acb377fb9c385
+SIZE (ete3-3.1.1.tar.gz) = 10504887

Added: head/biology/py-ete3/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/py-ete3/pkg-descr	Sat May 16 00:13:09 2020	(r535339)
@@ -0,0 +1,11 @@
+ETE is a Python programming toolkit that assists in the automated manipulation,
+analysis and visualization of phylogenetic trees. It provides a wide range of
+tree handling options, node annotation features and specialized features to deal
+with phylogenetic trees (i.e automatic orthology and paralogy detection,
+phylostratigraphy, tree reconciliation, etc). ETE implements also an interactive
+tree visualization system based on a a highly customizable tree drawing engine
+(PDF and SVG tree images). Although ETE is developed as a tool for phylogenetic
+analysis, it is also used to handle other types of hierarchical trees
+(i.e. clustering results).
+
+WWW: http://etetoolkit.org/