svn commit: r503695 - in head/biology/tRNAscan-SE: . files

[Steve Wills]

Author: swills
Date: Sat Jun  8 01:31:18 2019
New Revision: 503695
URL: https://svnweb.freebsd.org/changeset/ports/503695

Log:
  biology/tRNAscan-SE: Update to 2.0.3
  
  PR:		238253
  Submitted by:	Motomichi Matsuzaki <mzaki at niid.go.jp>

Modified:
  head/biology/tRNAscan-SE/Makefile   (contents, props changed)
  head/biology/tRNAscan-SE/distinfo   (contents, props changed)
  head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src   (contents, props changed)

Modified: head/biology/tRNAscan-SE/Makefile
==============================================================================
--- head/biology/tRNAscan-SE/Makefile	Sat Jun  8 01:29:44 2019	(r503694)
+++ head/biology/tRNAscan-SE/Makefile	Sat Jun  8 01:31:18 2019	(r503695)
@@ -2,10 +2,9 @@
 # $FreeBSD$
 
 PORTNAME=	tRNAscan-SE
-PORTVERSION=	2.0.0
-PORTREVISION=	1
+PORTVERSION=	2.0.3
 CATEGORIES=	biology
-MASTER_SITES=	http://lowelab.ucsc.edu/software/
+MASTER_SITES=	http://trna.ucsc.edu/software/
 DISTFILES=	${DISTNAME:tl}${EXTRACT_SUFX}
 
 MAINTAINER=	mzaki at niid.go.jp
@@ -16,7 +15,7 @@ LICENSE_FILE=	${WRKSRC}/COPYING
 
 RUN_DEPENDS=	cmsearch:biology/infernal
 
-WRKSRC=		${WRKDIR}/${DISTNAME:S,.0$,,}
+WRKSRC=		${WRKDIR}/${DISTNAME:C,\.[0-9]+$,,}
 
 GNU_CONFIGURE=	yes
 

Modified: head/biology/tRNAscan-SE/distinfo
==============================================================================
--- head/biology/tRNAscan-SE/distinfo	Sat Jun  8 01:29:44 2019	(r503694)
+++ head/biology/tRNAscan-SE/distinfo	Sat Jun  8 01:31:18 2019	(r503695)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1528270436
-SHA256 (trnascan-se-2.0.0.tar.gz) = 0dde1c07142e4bf77b21d53ddf3eeb1ef8c52248005a42323d13f8d7c798100c
-SIZE (trnascan-se-2.0.0.tar.gz) = 4372755
+TIMESTAMP = 1557725777
+SHA256 (trnascan-se-2.0.3.tar.gz) = b305c1bf226d16833349b22ad1f3160a52ad30f577a336128da3cc76d5772a4e
+SIZE (trnascan-se-2.0.3.tar.gz) = 4372985

Modified: head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src
==============================================================================
--- head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src	Sat Jun  8 01:29:44 2019	(r503694)
+++ head/biology/tRNAscan-SE/files/patch-tRNAscan-SE.src	Sat Jun  8 01:31:18 2019	(r503695)
@@ -1,12 +1,6 @@
---- tRNAscan-SE.src.orig	2017-12-03 01:59:25 UTC
+--- tRNAscan-SE.src.orig	2019-04-30 21:37:37 UTC
 +++ tRNAscan-SE.src
-@@ -1,4 +1,4 @@
--#! /usr/bin/perl
-+#! @PERL@
- #
- # --------------------------------------------------------------------
- # tRNAscan-SE: a program for improved detection of transfer RNA
-@@ -44,7 +44,7 @@ our $release_date = "December 2017";
+@@ -44,7 +44,7 @@ our $release_date = "April 2019";
  our $program_id = "tRNAscan-SE-".$version;
  
  # modified by 'make'