svn commit: r428874 - head/biology/p5-Bio-Graphics

[Sunpoet Po-Chuan Hsieh]

Author: sunpoet
Date: Sun Dec 18 15:26:11 2016
New Revision: 428874
URL: https://svnweb.freebsd.org/changeset/ports/428874

Log:
  - Update to 2.40
  - Update *_DEPENDS for biology/p5-bioperl renaming
  - Add NO_ARCH
  - Sort PLIST
  
  Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes

Modified:
  head/biology/p5-Bio-Graphics/Makefile
  head/biology/p5-Bio-Graphics/distinfo
  head/biology/p5-Bio-Graphics/pkg-plist

Modified: head/biology/p5-Bio-Graphics/Makefile
==============================================================================
--- head/biology/p5-Bio-Graphics/Makefile	Sun Dec 18 15:25:54 2016	(r428873)
+++ head/biology/p5-Bio-Graphics/Makefile	Sun Dec 18 15:26:11 2016	(r428874)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	Bio-Graphics
-PORTVERSION=	2.39
+PORTVERSION=	2.40
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 PKGNAMEPREFIX=	p5-
@@ -14,13 +14,21 @@ LICENSE=	ART10 GPLv1
 LICENSE_COMB=	dual
 
 BUILD_DEPENDS=	p5-Bio-SCF>=1.01:biology/p5-Bio-SCF \
+		p5-BioPerl>=1.6.0:biology/p5-BioPerl \
 		p5-GD>=2.30:graphics/p5-GD \
 		p5-GD-SVG>=0.32:graphics/p5-GD-SVG \
-		p5-Statistics-Descriptive>=2.6:math/p5-Statistics-Descriptive \
-		p5-bioperl>=1.6.0:biology/p5-bioperl
+		p5-Statistics-Descriptive>=2.6:math/p5-Statistics-Descriptive
 RUN_DEPENDS:=	${BUILD_DEPENDS}
 
+NO_ARCH=	yes
 USES=		perl5
 USE_PERL5=	modbuild
 
-.include <bsd.port.mk>
+.include <bsd.port.pre.mk>
+
+.if ${PERL_LEVEL} >= 502200
+BUILD_DEPENDS+=	p5-CGI>=0:www/p5-CGI
+RUN_DEPENDS+=	p5-CGI>=0:www/p5-CGI
+.endif
+
+.include <bsd.port.post.mk>

Modified: head/biology/p5-Bio-Graphics/distinfo
==============================================================================
--- head/biology/p5-Bio-Graphics/distinfo	Sun Dec 18 15:25:54 2016	(r428873)
+++ head/biology/p5-Bio-Graphics/distinfo	Sun Dec 18 15:26:11 2016	(r428874)
@@ -1,2 +1,3 @@
-SHA256 (Bio-Graphics-2.39.tar.gz) = 5602e56c469fba8be024d72bff7ec1502392d82ac0fde4d1399e02488d6bfd85
-SIZE (Bio-Graphics-2.39.tar.gz) = 1139511
+TIMESTAMP = 1482004816
+SHA256 (Bio-Graphics-2.40.tar.gz) = 7b20bcd9d87f3786b111ddeff2f60a51ec6712273f43547b73325dba3bebed32
+SIZE (Bio-Graphics-2.40.tar.gz) = 1105973

Modified: head/biology/p5-Bio-Graphics/pkg-plist
==============================================================================
--- head/biology/p5-Bio-Graphics/pkg-plist	Sun Dec 18 15:25:54 2016	(r428873)
+++ head/biology/p5-Bio-Graphics/pkg-plist	Sun Dec 18 15:26:11 2016	(r428874)
@@ -1,4 +1,6 @@
+bin/bam_coverage_windows.pl
 bin/contig_draw.pl
+bin/coverage_to_topoview.pl
 bin/feature_draw.pl
 bin/frend.pl
 bin/glyph_help.pl
@@ -88,6 +90,7 @@ bin/search_overview.pl
 %%SITE_PERL%%/Bio/Graphics/Glyph/three_letters.pm
 %%SITE_PERL%%/Bio/Graphics/Glyph/tic_tac_toe.pm
 %%SITE_PERL%%/Bio/Graphics/Glyph/toomany.pm
+%%SITE_PERL%%/Bio/Graphics/Glyph/topoview.pm
 %%SITE_PERL%%/Bio/Graphics/Glyph/trace.pm
 %%SITE_PERL%%/Bio/Graphics/Glyph/track.pm
 %%SITE_PERL%%/Bio/Graphics/Glyph/transcript.pm
@@ -112,6 +115,10 @@ bin/search_overview.pl
 %%SITE_PERL%%/Bio/Graphics/Util.pm
 %%SITE_PERL%%/Bio/Graphics/Wiggle.pm
 %%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm
+%%PERL5_MAN1%%/contig_draw.pl.1.gz
+%%PERL5_MAN1%%/feature_draw.pl.1.gz
+%%PERL5_MAN1%%/frend.pl.1.gz
+%%PERL5_MAN1%%/search_overview.pl.1.gz
 %%PERL5_MAN3%%/Bio::Graphics.3.gz
 %%PERL5_MAN3%%/Bio::Graphics::ConfiguratorI.3.gz
 %%PERL5_MAN3%%/Bio::Graphics::DrawTransmembrane.3.gz
@@ -212,7 +219,3 @@ bin/search_overview.pl
 %%PERL5_MAN3%%/Bio::Graphics::Util.3.gz
 %%PERL5_MAN3%%/Bio::Graphics::Wiggle.3.gz
 %%PERL5_MAN3%%/Bio::Graphics::Wiggle::Loader.3.gz
-%%PERL5_MAN1%%/contig_draw.pl.1.gz
-%%PERL5_MAN1%%/feature_draw.pl.1.gz
-%%PERL5_MAN1%%/frend.pl.1.gz
-%%PERL5_MAN1%%/search_overview.pl.1.gz