svn commit: r383309 - in head/biology: consed migrate ncbi-blast+ njplot ortep3 p5-Bio-ASN1-EntrezGene paml platon povchem seaview
Baptiste Daroussin
bapt at FreeBSD.org
Sun Apr 5 17:55:40 UTC 2015
Author: bapt
Date: Sun Apr 5 17:55:35 2015
New Revision: 383309
URL: https://svnweb.freebsd.org/changeset/ports/383309
Log:
Mark as broken unfetchable ports
Modified:
head/biology/consed/Makefile
head/biology/migrate/Makefile
head/biology/ncbi-blast+/Makefile
head/biology/njplot/Makefile
head/biology/ortep3/Makefile
head/biology/p5-Bio-ASN1-EntrezGene/Makefile
head/biology/paml/Makefile
head/biology/platon/Makefile
head/biology/povchem/Makefile
head/biology/seaview/Makefile
Modified: head/biology/consed/Makefile
==============================================================================
--- head/biology/consed/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/consed/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -11,6 +11,8 @@ DISTNAME= ${PORTNAME}_linux
MAINTAINER= mzaki at m.u-tokyo.ac.jp
COMMENT= Graphical tool for editing Phrap assemblies
+BROKEN= Unfetchable
+
RUN_DEPENDS= phred:${PORTSDIR}/biology/phred \
phrap:${PORTSDIR}/biology/phrap
Modified: head/biology/migrate/Makefile
==============================================================================
--- head/biology/migrate/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/migrate/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -10,6 +10,8 @@ DISTNAME= ${PORTNAME}-${PORTVERSION}.src
MAINTAINER= ports at FreeBSD.org
COMMENT= Program to estimate population sizes and migration rates
+BROKEN= unfetchable
+
GNU_CONFIGURE= yes
CONFIGURE_ENV= ac_cv_prog_GMAKE="${MAKE}"
MAKE_ARGS= PRETTYCFLAGS="${CFLAGS} -DNOJPEG -DNOZLIB -DNOPNG -Iharu \
Modified: head/biology/ncbi-blast+/Makefile
==============================================================================
--- head/biology/ncbi-blast+/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/ncbi-blast+/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -12,6 +12,8 @@ DISTNAME= ncbi-blast-${PORTVERSION}+-src
MAINTAINER= jwbacon at tds.net
COMMENT= NCBI implementation of Basic Local Alignment Search Tool
+BROKEN= Unfetchable
+
LICENSE= Public_domain
LICENSE_NAME= Public Domain
LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE
Modified: head/biology/njplot/Makefile
==============================================================================
--- head/biology/njplot/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/njplot/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -10,6 +10,8 @@ MASTER_SITES= ftp://pbil.univ-lyon1.fr/p
MAINTAINER= mzaki at m.u-tokyo.ac.jp
COMMENT= Phylogenetic tree drawing program capable of interactive manipulation
+BROKEN= Unfetchable
+
OPTIONS_DEFINE= DOCS X11
OPTIONS_DEFAULT= DOCS X11
Modified: head/biology/ortep3/Makefile
==============================================================================
--- head/biology/ortep3/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/ortep3/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -13,6 +13,8 @@ EXTRACT_ONLY= ortep.tar.Z
MAINTAINER= ports at FreeBSD.org
COMMENT= Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
+BROKEN= Unfetchable
+
PGPLOT_LIB_DEPENDS= libpgplot.so:${PORTSDIR}/graphics/pgplot
USES= fortran
Modified: head/biology/p5-Bio-ASN1-EntrezGene/Makefile
==============================================================================
--- head/biology/p5-Bio-ASN1-EntrezGene/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/p5-Bio-ASN1-EntrezGene/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -11,6 +11,8 @@ PKGNAMEPREFIX= p5-
MAINTAINER= mauricio at arareko.net
COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene
+BROKEN= Unfetchable
+
WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-1.09
USES= perl5 tar:tgz
Modified: head/biology/paml/Makefile
==============================================================================
--- head/biology/paml/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/paml/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -10,6 +10,8 @@ DISTNAME= ${PORTNAME}${PORTVERSION}
MAINTAINER= jrm at ftfl.ca
COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML)
+BROKEN= Unfetchable
+
USES= gmake tar:tgz
WRKSRC= ${WRKDIR}/${PORTNAME}${PORTVERSION}/src
MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}"
Modified: head/biology/platon/Makefile
==============================================================================
--- head/biology/platon/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/platon/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -16,6 +16,7 @@ COMMENT= Tool for viewing molecular/crys
# There is a charge of US$ 5000 for commercial users.
NO_CDROM= free for academic, US$ 5000 for commercial users
+BROKEN= Unfetchable
USES= fortran
USE_XORG= x11
Modified: head/biology/povchem/Makefile
==============================================================================
--- head/biology/povchem/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/povchem/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -17,6 +17,7 @@ COMMENT= Simple yet powerful tool to gen
RUN_DEPENDS= povray:${PORTSDIR}/graphics/povray-meta
+BROKEN= Unfetchable
NO_WRKSUBDIR= yes
USES= dos2unix
Modified: head/biology/seaview/Makefile
==============================================================================
--- head/biology/seaview/Makefile Sun Apr 5 17:29:01 2015 (r383308)
+++ head/biology/seaview/Makefile Sun Apr 5 17:55:35 2015 (r383309)
@@ -14,6 +14,8 @@ COMMENT= Multiple DNA/protein sequence a
LICENSE= GPLv3
+BROKEN= Unfetchable
+
LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk \
libpng.so:${PORTSDIR}/graphics/png
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