svn commit: r350214 - head/biology/paml

[Wen Heping]

Author: wen
Date: Sat Apr  5 10:56:52 2014
New Revision: 350214
URL: http://svnweb.freebsd.org/changeset/ports/350214
QAT: https://qat.redports.org/buildarchive/r350214/

Log:
  - Update to 4.8
  - Reset maintainer to ports@

Modified:
  head/biology/paml/Makefile
  head/biology/paml/distinfo
  head/biology/paml/pkg-plist

Modified: head/biology/paml/Makefile
==============================================================================
--- head/biology/paml/Makefile	Sat Apr  5 10:42:18 2014	(r350213)
+++ head/biology/paml/Makefile	Sat Apr  5 10:56:52 2014	(r350214)
@@ -2,20 +2,21 @@
 # $FreeBSD$
 
 PORTNAME=	paml
-PORTVERSION=	4.4c
+PORTVERSION=	4.8
 CATEGORIES=	biology
 MASTER_SITES=	http://abacus.gene.ucl.ac.uk/software/
 DISTNAME=	${PORTNAME}${PORTVERSION}
+EXTRACT_SUFX=	.tgz
 
-MAINTAINER=	wen at FreeBSD.org
+MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Phylogenetic Analysis by Maximum Likelihood (PAML)
 
 USES=		gmake
-WRKSRC=		${WRKDIR}/${PORTNAME}44/src
+WRKSRC=		${WRKDIR}/${PORTNAME}${PORTVERSION}/src
 MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}"
 
 BINARIES=	baseml basemlg chi2 codeml evolver pamp yn00
-DOC_FILES=	MCMCtreeDoc.pdf pamlDOC.pdf pamlFAQs.pdf pamlHistory.txt
+DOC_FILES=	pamlDOC.pdf pamlFAQs.pdf pamlHistory.txt
 
 OPTIONS_DEFINE=	DOCS
 
@@ -25,7 +26,7 @@ do-install:
 .endfor
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 .for f in ${DOC_FILES}
-	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}44/doc/${f} ${STAGEDIR}${DOCSDIR}
+	${INSTALL_DATA} ${WRKDIR}/${PORTNAME}${PORTVERSION}/doc/${f} ${STAGEDIR}${DOCSDIR}
 .endfor
 
 .include <bsd.port.mk>

Modified: head/biology/paml/distinfo
==============================================================================
--- head/biology/paml/distinfo	Sat Apr  5 10:42:18 2014	(r350213)
+++ head/biology/paml/distinfo	Sat Apr  5 10:56:52 2014	(r350214)
@@ -1,2 +1,2 @@
-SHA256 (paml4.4c.tar.gz) = 08aad25b6b06a359d4f2f12a60ea601c95694864d5f29f7028f67b80890974d6
-SIZE (paml4.4c.tar.gz) = 2891715
+SHA256 (paml4.8.tgz) = 67498283308824cd5a3986db382bec275432e817f6719b8faf99fa2509f32781
+SIZE (paml4.8.tgz) = 4835110

Modified: head/biology/paml/pkg-plist
==============================================================================
--- head/biology/paml/pkg-plist	Sat Apr  5 10:42:18 2014	(r350213)
+++ head/biology/paml/pkg-plist	Sat Apr  5 10:56:52 2014	(r350214)
@@ -6,7 +6,6 @@ bin/evolver
 bin/pamp
 bin/yn00
 %%PORTDOCS%%%%DOCSDIR%%/pamlDOC.pdf
-%%PORTDOCS%%%%DOCSDIR%%/MCMCtreeDoc.pdf
 %%PORTDOCS%%%%DOCSDIR%%/pamlFAQs.pdf
 %%PORTDOCS%%%%DOCSDIR%%/pamlHistory.txt
 %%PORTDOCS%%@dirrm %%DOCSDIR%%