svn commit: r323340 - head/biology/p5-Bio-Phylo

[Wen Heping]

Author: wen
Date: Sat Jul 20 10:04:32 2013
New Revision: 323340
URL: http://svnweb.freebsd.org/changeset/ports/323340

Log:
  - Update to 0.56

Modified:
  head/biology/p5-Bio-Phylo/Makefile
  head/biology/p5-Bio-Phylo/distinfo
  head/biology/p5-Bio-Phylo/pkg-plist

Modified: head/biology/p5-Bio-Phylo/Makefile
==============================================================================
--- head/biology/p5-Bio-Phylo/Makefile	Sat Jul 20 10:03:10 2013	(r323339)
+++ head/biology/p5-Bio-Phylo/Makefile	Sat Jul 20 10:04:32 2013	(r323340)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	Bio-Phylo
-PORTVERSION=	0.52
+PORTVERSION=	0.56
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 PKGNAMEPREFIX=	p5-
@@ -52,10 +52,13 @@ MAN3=		Bio::Phylo.3 \
 		Bio::Phylo::Matrices::Datatype::Continuous.3 \
 		Bio::Phylo::Matrices::Datatype::Custom.3 \
 		Bio::Phylo::Matrices::Datatype::Dna.3 \
+		Bio::Phylo::Matrices::Datatype::Illumina.3 \
 		Bio::Phylo::Matrices::Datatype::Mixed.3 \
 		Bio::Phylo::Matrices::Datatype::Protein.3 \
 		Bio::Phylo::Matrices::Datatype::Restriction.3 \
 		Bio::Phylo::Matrices::Datatype::Rna.3 \
+		Bio::Phylo::Matrices::Datatype::Sanger.3 \
+		Bio::Phylo::Matrices::Datatype::Solexa.3 \
 		Bio::Phylo::Matrices::Datatype::Standard.3 \
 		Bio::Phylo::Matrices::Datum.3 \
 		Bio::Phylo::Matrices::DatumRole.3 \
@@ -77,6 +80,7 @@ MAN3=		Bio::Phylo.3 \
 		Bio::Phylo::Parsers::Abstract.3 \
 		Bio::Phylo::Parsers::Adjacency.3 \
 		Bio::Phylo::Parsers::Fasta.3 \
+		Bio::Phylo::Parsers::Fastq.3 \
 		Bio::Phylo::Parsers::Figtree.3 \
 		Bio::Phylo::Parsers::Json.3 \
 		Bio::Phylo::Parsers::Newick.3 \
@@ -133,10 +137,12 @@ MAN3=		Bio::Phylo.3 \
 		Bio::Phylo::Unparsers::Rss1.3 \
 		Bio::Phylo::Unparsers::Taxlist.3 \
 		Bio::Phylo::Util::CONSTANT.3 \
+		Bio::Phylo::Util::CONSTANT::Int.3 \
 		Bio::Phylo::Util::Dependency.3 \
 		Bio::Phylo::Util::Exceptions.3 \
 		Bio::Phylo::Util::IDPool.3 \
 		Bio::Phylo::Util::Logger.3 \
+		Bio::Phylo::Util::MOP.3 \
 		Bio::Phylo::Util::OptionalInterface.3 \
 		Bio::Phylo::Util::StackTrace.3 \
 		Bio::PhyloRole.3

Modified: head/biology/p5-Bio-Phylo/distinfo
==============================================================================
--- head/biology/p5-Bio-Phylo/distinfo	Sat Jul 20 10:03:10 2013	(r323339)
+++ head/biology/p5-Bio-Phylo/distinfo	Sat Jul 20 10:04:32 2013	(r323340)
@@ -1,2 +1,2 @@
-SHA256 (Bio-Phylo-0.52.tar.gz) = 5c023acc76fb643581bc3612a80e9081ad1a795270bbc02a15f4460637c526c3
-SIZE (Bio-Phylo-0.52.tar.gz) = 398024
+SHA256 (Bio-Phylo-0.56.tar.gz) = f10e7d4c24911c18f0f055b1f2f910507a34b1256e1bdaf139bd502368240bd9
+SIZE (Bio-Phylo-0.56.tar.gz) = 472198

Modified: head/biology/p5-Bio-Phylo/pkg-plist
==============================================================================
--- head/biology/p5-Bio-Phylo/pkg-plist	Sat Jul 20 10:03:10 2013	(r323339)
+++ head/biology/p5-Bio-Phylo/pkg-plist	Sat Jul 20 10:04:32 2013	(r323340)
@@ -22,10 +22,13 @@
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Continuous.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Custom.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Dna.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Illumina.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Mixed.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Protein.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Restriction.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Rna.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Sanger.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Solexa.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Standard.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
 %%SITE_PERL%%/Bio/Phylo/Matrices/DatumRole.pm
@@ -53,6 +56,7 @@
 %%SITE_PERL%%/Bio/Phylo/Parsers/Abstract.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Adjacency.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Fasta.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Fastq.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Figtree.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Json.pm
 %%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm