svn commit: r562172 - in head/science: . py-dipy

[Yuri Victorovich]

Author: yuri
Date: Thu Jan 21 03:21:18 2021
New Revision: 562172
URL: https://svnweb.freebsd.org/changeset/ports/562172

Log:
  New port: science/py-dipy: Python toolbox for analysis of MR diffusion imaging

Added:
  head/science/py-dipy/
  head/science/py-dipy/Makefile   (contents, props changed)
  head/science/py-dipy/distinfo   (contents, props changed)
  head/science/py-dipy/pkg-descr   (contents, props changed)
  head/science/py-dipy/pkg-plist   (contents, props changed)
Modified:
  head/science/Makefile

Modified: head/science/Makefile
==============================================================================
--- head/science/Makefile	Thu Jan 21 03:05:07 2021	(r562171)
+++ head/science/Makefile	Thu Jan 21 03:21:18 2021	(r562172)
@@ -230,6 +230,7 @@
     SUBDIR += py-chainer-chemistry
     SUBDIR += py-chempy
     SUBDIR += py-coards
+    SUBDIR += py-dipy
     SUBDIR += py-dlib
     SUBDIR += py-eccodes
     SUBDIR += py-esda

Added: head/science/py-dipy/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/py-dipy/Makefile	Thu Jan 21 03:21:18 2021	(r562172)
@@ -0,0 +1,29 @@
+# $FreeBSD$
+
+PORTNAME=	dipy
+DISTVERSION=	1.3.0
+CATEGORIES=	science python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Python toolbox for analysis of MR diffusion imaging
+
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+PY_DEPENDS=	${PYNUMPY} \
+		${PYTHON_PKGNAMEPREFIX}h5py>0:science/py-h5py@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}tqdm>0:misc/py-tqdm@${PY_FLAVOR}
+BUILD_DEPENDS=	${PY_DEPENDS}
+RUN_DEPENDS=	${PY_DEPENDS}
+
+USES=		python:3.6+
+USE_PYTHON=	distutils cython concurrent autoplist # pkg-plist also exists and contains files missing from the python-generated plist
+
+post-install:
+	${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/${PORTNAME}/*/*.so
+
+.include <bsd.port.mk>

Added: head/science/py-dipy/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/py-dipy/distinfo	Thu Jan 21 03:21:18 2021	(r562172)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1611196381
+SHA256 (dipy-1.3.0.tar.gz) = c5be00719a01f63be0e22eed389eaa0ec2423a863e16a83dea3e9eeaa9cf6034
+SIZE (dipy-1.3.0.tar.gz) = 11703845

Added: head/science/py-dipy/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/py-dipy/pkg-descr	Thu Jan 21 03:21:18 2021	(r562172)
@@ -0,0 +1,7 @@
+DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods
+for spatial normalization, signal processing, machine learning, statistical
+analysis and visualization of medical images. Additionally, it contains
+specialized methods for computational anatomy including diffusion, perfusion and
+structural imaging.
+
+WWW: https://dipy.org/

Added: head/science/py-dipy/pkg-plist
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/science/py-dipy/pkg-plist	Thu Jan 21 03:21:18 2021	(r562172)
@@ -0,0 +1,4 @@
+%%PYTHON_SITELIBDIR%%/dipy/COMMIT_INFO.txt
+%%PYTHON_SITELIBDIR%%/dipy/__config__.py
+%%PYTHON_SITELIBDIR%%/dipy/__pycache__/__config__.cpython-37.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/dipy/__pycache__/__config__.cpython-37.pyc