svn commit: r536875 - head/biology/py-biopython

[Jason W. Bacon]

Author: jwb
Date: Fri May 29 02:03:29 2020
New Revision: 536875
URL: https://svnweb.freebsd.org/changeset/ports/536875

Log:
  biology/py-biopython: Upgrade to 1.77
  
  Upstream support for python 3
  
  PR:             ports/246763
  Submitted by:   Mauricio Herrera Cuadra <mauricio at arareko.net>

Modified:
  head/biology/py-biopython/Makefile
  head/biology/py-biopython/distinfo

Modified: head/biology/py-biopython/Makefile
==============================================================================
--- head/biology/py-biopython/Makefile	Fri May 29 02:00:00 2020	(r536874)
+++ head/biology/py-biopython/Makefile	Fri May 29 02:03:29 2020	(r536875)
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	biopython
-PORTVERSION=	1.73
-PORTREVISION=	1
+DISTVERSION=	1.77
 CATEGORIES=	biology python
 MASTER_SITES=	http://www.biopython.org/DIST/
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -20,13 +19,16 @@ RUN_DEPENDS=	${PYNUMPY}
 USES=		python
 USE_PYTHON=	distutils autoplist
 
-OPTIONS_DEFINE=	REPORTLAB
+OPTIONS_DEFINE=		REPORTLAB
 OPTIONS_DEFAULT=	REPORTLAB
 
-REPORTLAB_DESC=	PDF support in Bio.Graphics module
+REPORTLAB_DESC=		PDF support in Bio.Graphics module
 REPORTLAB_RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}reportlab>0:print/py-reportlab@${PY_FLAVOR}
 
-pre-configure: # unbreak for python3: README.rst can't be decoded with the ascii codec: https://github.com/biopython/biopython/issues/1649
-	@truncate -s 0 ${WRKSRC}/README.rst
+post-install:
+	@${STRIP_CMD} \
+		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*.so \
+		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*/*.so \
+		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/Bio/*/*/*.so \
 
 .include <bsd.port.mk>

Modified: head/biology/py-biopython/distinfo
==============================================================================
--- head/biology/py-biopython/distinfo	Fri May 29 02:00:00 2020	(r536874)
+++ head/biology/py-biopython/distinfo	Fri May 29 02:03:29 2020	(r536875)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1545454134
-SHA256 (biopython-1.73.tar.gz) = 70c5cc27dc61c23d18bb33b6d38d70edc4b926033aea3b7434737c731c94a5e0
-SIZE (biopython-1.73.tar.gz) = 15715102
+TIMESTAMP = 1590688894
+SHA256 (biopython-1.77.tar.gz) = fb1936e9ca9e7af8de1050e84375f23328e04b801063edf0ad73733494d8ec42
+SIZE (biopython-1.77.tar.gz) = 16837021