svn commit: r529953 - in head/biology/cufflinks: . files

[Yuri Victorovich]

Author: yuri
Date: Tue Mar 31 06:42:22 2020
New Revision: 529953
URL: https://svnweb.freebsd.org/changeset/ports/529953

Log:
  biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89
  
  Add the pull request that fixes the boost::thread build failures.

Deleted:
  head/biology/cufflinks/files/patch-src_biascorrection.h
Modified:
  head/biology/cufflinks/Makefile
  head/biology/cufflinks/distinfo

Modified: head/biology/cufflinks/Makefile
==============================================================================
--- head/biology/cufflinks/Makefile	Tue Mar 31 06:35:49 2020	(r529952)
+++ head/biology/cufflinks/Makefile	Tue Mar 31 06:42:22 2020	(r529953)
@@ -2,10 +2,12 @@
 
 PORTNAME=	cufflinks
 DISTVERSIONPREFIX=	v
-DISTVERSION=	2.2.1-83
-DISTVERSIONSUFFIX=	-gb4fa050
-PORTREVISION=	2
+DISTVERSION=	2.2.1-89
+DISTVERSIONSUFFIX=	-gdc3b0cb
 CATEGORIES=	biology
+
+PATCH_SITES=	https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/
+PATCHFILES+=	ea4671149f3054c773d99cea521db75bf7b0658f.patch:-p1 # https://github.com/cole-trapnell-lab/cufflinks/pull/127
 
 MAINTAINER=	yuri at FreeBSD.org
 COMMENT=	Cufflinks assembles transcripts, estimates their abundance, etc

Modified: head/biology/cufflinks/distinfo
==============================================================================
--- head/biology/cufflinks/distinfo	Tue Mar 31 06:35:49 2020	(r529952)
+++ head/biology/cufflinks/distinfo	Tue Mar 31 06:42:22 2020	(r529953)
@@ -1,3 +1,5 @@
-TIMESTAMP = 1558818522
-SHA256 (cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz) = 0b26b02c080115d4262d466503bdc43db5ff5583d8122e77355782dc7cbe0522
-SIZE (cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz) = 8804967
+TIMESTAMP = 1585636520
+SHA256 (cole-trapnell-lab-cufflinks-v2.2.1-89-gdc3b0cb_GH0.tar.gz) = 3947a7266b4f58a92b3944b8e205c8875a7c0ce9ea19b394ea82ff77b91999be
+SIZE (cole-trapnell-lab-cufflinks-v2.2.1-89-gdc3b0cb_GH0.tar.gz) = 8807044
+SHA256 (ea4671149f3054c773d99cea521db75bf7b0658f.patch) = d64446bab1b683dbdb51b33992694bbbc6511aa4eacd2b95812da75e090dff47
+SIZE (ea4671149f3054c773d99cea521db75bf7b0658f.patch) = 3779