svn commit: r518242 - head/biology/py-cutadapt

[Jason W. Bacon]

Author: jwb
Date: Sat Nov 23 14:45:53 2019
New Revision: 518242
URL: https://svnweb.freebsd.org/changeset/ports/518242

Log:
  biology/py-cutadapt: Upgrade to 2.7
  
  Numerous minor fixes and enhancements.
  Upstreamed setup.py patches for dependency versions.
  
  Reported by:    portscout

Modified:
  head/biology/py-cutadapt/Makefile
  head/biology/py-cutadapt/distinfo

Modified: head/biology/py-cutadapt/Makefile
==============================================================================
--- head/biology/py-cutadapt/Makefile	Sat Nov 23 14:41:38 2019	(r518241)
+++ head/biology/py-cutadapt/Makefile	Sat Nov 23 14:45:53 2019	(r518242)
@@ -1,7 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	cutadapt
-DISTVERSION=	2.5
+DISTVERSION=	2.7
 CATEGORIES=	biology python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
@@ -13,13 +13,12 @@ LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BUILD_DEPENDS=	${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR}
-RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}xopen>=0.5.0:archivers/py-xopen@${PY_FLAVOR} \
-		${PYTHON_PKGNAMEPREFIX}dnaio>=0.3:biology/py-dnaio@${PY_FLAVOR} \
-		pigz>=0:archivers/pigz
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}xopen>=0.8.4:archivers/py-xopen@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}dnaio>=0.4.1:biology/py-dnaio@${PY_FLAVOR}
 TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pytest>0:devel/py-pytest@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pytest-timeout>0:devel/py-pytest-timeout@${PY_FLAVOR}
 
-USES=		python:3.4+
+USES=		python:3.5+
 USE_PYTHON=	autoplist concurrent cython distutils
 
 post-install:

Modified: head/biology/py-cutadapt/distinfo
==============================================================================
--- head/biology/py-cutadapt/distinfo	Sat Nov 23 14:41:38 2019	(r518241)
+++ head/biology/py-cutadapt/distinfo	Sat Nov 23 14:45:53 2019	(r518242)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1568342520
-SHA256 (cutadapt-2.5.tar.gz) = ced79e49b93e922e579d0bb9d21298dcb2d7b7b1ea721feed484277e08b1660b
-SIZE (cutadapt-2.5.tar.gz) = 269321
+TIMESTAMP = 1574517013
+SHA256 (cutadapt-2.7.tar.gz) = 070dec8d94b8bda72906c614b9e71bd61254a67a176dd17e5b57671edd567983
+SIZE (cutadapt-2.7.tar.gz) = 272702