svn commit: r502128 - in head/biology: . mothur

[Yuri Victorovich]

Author: yuri
Date: Mon May 20 17:59:17 2019
New Revision: 502128
URL: https://svnweb.freebsd.org/changeset/ports/502128

Log:
  New port: biology/mothur: Software for bioinformatics of the microbial ecology community

Added:
  head/biology/mothur/
  head/biology/mothur/Makefile   (contents, props changed)
  head/biology/mothur/distinfo   (contents, props changed)
  head/biology/mothur/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Mon May 20 17:12:23 2019	(r502127)
+++ head/biology/Makefile	Mon May 20 17:59:17 2019	(r502128)
@@ -72,6 +72,7 @@
     SUBDIR += minimap2
     SUBDIR += molden
     SUBDIR += mopac
+    SUBDIR += mothur
     SUBDIR += mrbayes
     SUBDIR += mummer
     SUBDIR += muscle

Added: head/biology/mothur/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/mothur/Makefile	Mon May 20 17:59:17 2019	(r502128)
@@ -0,0 +1,33 @@
+# $FreeBSD$
+
+PORTNAME=	mothur
+DISTVERSIONPREFIX=	v
+DISTVERSION=	1.42.1-3
+DISTVERSIONSUFFIX=	-gb670137a
+CATEGORIES=	biology
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Software for bioinformatics of the microbial ecology community
+
+LICENSE=	GPLv3
+LICENSE_FILE=	${WRKSRC}/LICENSE.md
+
+BUILD_DEPENDS=	bash:shells/bash
+
+USES=		gmake localbase readline shebangfix
+SHEBANG_FILES=	source/uchime_src/mk
+USE_GITHUB=	yes
+ALL_TARGET=	${PORTNAME}
+
+BINARY_ALIAS=	g++=${CXX}
+
+EXES=		${PORTNAME} uchime
+
+PLIST_FILES=	${EXES:S/^/bin\//}
+
+do-install: # https://github.com/mothur/mothur/issues/615
+.for e in ${EXES}
+	${INSTALL_PROGRAM} ${WRKSRC}/${e} ${STAGEDIR}${PREFIX}/bin
+.endfor
+
+.include <bsd.port.mk>

Added: head/biology/mothur/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/mothur/distinfo	Mon May 20 17:59:17 2019	(r502128)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1558374468
+SHA256 (mothur-mothur-v1.42.1-3-gb670137a_GH0.tar.gz) = fe7742102af4eb62fef75357b3a2563283e70f8ec344898f7c4396ff41309bf1
+SIZE (mothur-mothur-v1.42.1-3-gb670137a_GH0.tar.gz) = 1651578

Added: head/biology/mothur/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/mothur/pkg-descr	Mon May 20 17:59:17 2019	(r502128)
@@ -0,0 +1,4 @@
+This project seeks to develop a single piece of open-source, expandable software
+to fill the bioinformatics needs of the microbial ecology community.
+
+WWW: https://www.mothur.org/