svn commit: r506417 - in head/biology: . libbigwig libbigwig/files

[Yuri Victorovich]

Author: yuri
Date: Thu Jul 11 17:05:22 2019
New Revision: 506417
URL: https://svnweb.freebsd.org/changeset/ports/506417

Log:
  New port: biology/libbigwig: C library for handling bigWig files (containing genomic data)

Added:
  head/biology/libbigwig/
  head/biology/libbigwig/Makefile   (contents, props changed)
  head/biology/libbigwig/distinfo   (contents, props changed)
  head/biology/libbigwig/files/
  head/biology/libbigwig/files/patch-Makefile   (contents, props changed)
  head/biology/libbigwig/pkg-descr   (contents, props changed)
Modified:
  head/biology/Makefile

Modified: head/biology/Makefile
==============================================================================
--- head/biology/Makefile	Thu Jul 11 16:59:17 2019	(r506416)
+++ head/biology/Makefile	Thu Jul 11 17:05:22 2019	(r506417)
@@ -65,6 +65,7 @@
     SUBDIR += kallisto
     SUBDIR += lagan
     SUBDIR += lamarc
+    SUBDIR += libbigwig
     SUBDIR += libgtextutils
     SUBDIR += libsbml
     SUBDIR += linux-foldingathome

Added: head/biology/libbigwig/Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/libbigwig/Makefile	Thu Jul 11 17:05:22 2019	(r506417)
@@ -0,0 +1,33 @@
+# $FreeBSD$
+
+PORTNAME=	libbigwig
+DISTVERSION=	0.4.4
+CATEGORIES=	biology
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	C library for handling bigWig files (containing genomic data)
+
+LICENSE=	MIT
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+LIB_DEPENDS=	libcurl.so:ftp/curl
+
+USES=		gmake localbase:ldflags
+USE_GITHUB=	yes
+GH_ACCOUNT=	dpryan79
+GH_PROJECT=	libBigWig
+USE_LDCONFIG=	yes
+
+MAKE_ARGS=	LDFLAGS=-L${LOCALBASE}/lib
+
+PLIST_FILES=	include/bigWig.h \
+		include/bigWigIO.h \
+		include/bwCommon.h \
+		include/bwValues.h \
+		lib/libBigWig.a \
+		lib/libBigWig.so
+
+post-stage:
+	@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libBigWig.so
+
+.include <bsd.port.mk>

Added: head/biology/libbigwig/distinfo
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/libbigwig/distinfo	Thu Jul 11 17:05:22 2019	(r506417)
@@ -0,0 +1,3 @@
+TIMESTAMP = 1562863376
+SHA256 (dpryan79-libBigWig-0.4.4_GH0.tar.gz) = 43a2298b2ebadc48103447a3bb4426df1b38d1bec5fa564e50ed2f00cc060478
+SIZE (dpryan79-libBigWig-0.4.4_GH0.tar.gz) = 272926

Added: head/biology/libbigwig/files/patch-Makefile
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/libbigwig/files/patch-Makefile	Thu Jul 11 17:05:22 2019	(r506417)
@@ -0,0 +1,14 @@
+--- Makefile.orig	2019-07-11 16:45:26 UTC
++++ Makefile
+@@ -71,7 +71,7 @@ clean:
+ 	rm -f *.o libBigWig.a libBigWig.so *.pico test/testLocal test/testRemote test/testWrite test/exampleWrite test/testRemoteManyContigs test/testBigBed test/testIterator example_output.bw
+ 
+ install: libBigWig.a libBigWig.so
+-	install -d $(prefix)/lib $(prefix)/include
+-	install libBigWig.a $(prefix)/lib
+-	install libBigWig.so $(prefix)/lib
+-	install *.h $(prefix)/include
++	install -d $(prefix)/lib $(DESTDIR)$(prefix)/include
++	install libBigWig.a $(DESTDIR)$(prefix)/lib
++	install libBigWig.so $(DESTDIR)$(prefix)/lib
++	install *.h $(DESTDIR)$(prefix)/include

Added: head/biology/libbigwig/pkg-descr
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/libbigwig/pkg-descr	Thu Jul 11 17:05:22 2019	(r506417)
@@ -0,0 +1,3 @@
+A C library for reading/parsing local and remote bigWig and bigBed files.
+
+WWW: https://github.com/dpryan79/libBigWig