svn commit: r455045 - head/biology/bwa

[Jason W. Bacon]

Author: jwb
Date: Tue Nov 28 15:21:01 2017
New Revision: 455045
URL: https://svnweb.freebsd.org/changeset/ports/455045

Log:
  biology/bwa: Upgrade to 0.7.17
  
  Approved by:    jrm (mentor)
  Differential Revision:  https://reviews.freebsd.org/D13283

Modified:
  head/biology/bwa/Makefile
  head/biology/bwa/distinfo

Modified: head/biology/bwa/Makefile
==============================================================================
--- head/biology/bwa/Makefile	Tue Nov 28 15:16:38 2017	(r455044)
+++ head/biology/bwa/Makefile	Tue Nov 28 15:21:01 2017	(r455045)
@@ -2,24 +2,28 @@
 # $FreeBSD$
 
 PORTNAME=	bwa
-PORTVERSION=	0.7.9a
+PORTVERSION=	0.7.17
+DISTVERSIONPREFIX=v
 CATEGORIES=	biology
-MASTER_SITES=	SF/bio-bwa/
 
 MAINTAINER=	bacon4000 at gmail.com
 COMMENT=	Burrows-Wheeler sequence aligner
 
 LICENSE=	GPLv3
 
+# From 0.7.9a: Recheck for 0.7.17.
 BROKEN_aarch64=		fails to compile: invalid conversion between vector type and integer type
 BROKEN_armv6=		fails to compile: invalid conversion between vector type and integer type
 BROKEN_mips=		fails to compile: cc1: unrecognized command line option "-msse2"
 BROKEN_mips64=		fails to compile: cc1: unrecognized command line option "-msse2"
 BROKEN_powerpc64=	fails to compile: ksw.c: emmintrin.h: No such file or directory
 
-USES=		perl5 shebangfix tar:bzip2
+USES=		gmake perl5 shebangfix tar:bzip2
 SHEBANG_FILES=	qualfa2fq.pl xa2multi.pl
 USE_PERL5=	run
+
+USE_GITHUB=	yes
+GH_ACCOUNT=	lh3
 
 PLIST_FILES=	bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz
 

Modified: head/biology/bwa/distinfo
==============================================================================
--- head/biology/bwa/distinfo	Tue Nov 28 15:16:38 2017	(r455044)
+++ head/biology/bwa/distinfo	Tue Nov 28 15:21:01 2017	(r455045)
@@ -1,2 +1,3 @@
-SHA256 (bwa-0.7.9a.tar.bz2) = f5ad30e4e5ea86a8dcd6febcb6f620a75c82b03024f64a572017c295a962eadc
-SIZE (bwa-0.7.9a.tar.bz2) = 166193
+TIMESTAMP = 1511844744
+SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd
+SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593