svn commit: r385561 - head/biology/seqtools

[Kurt Jaeger]

Author: pi
Date: Wed May  6 20:30:53 2015
New Revision: 385561
URL: https://svnweb.freebsd.org/changeset/ports/385561

Log:
  biology/seqtools: 4.33 -> 4.34.1
  
  Blixem
  - Added functionality to shift-select a range of coordinates,
    and copy the reference/match sequence for that range.
  - DNA search now highlights the resultant range of coordinates.
  - Added a splitter bar to allow the variations track to be resized.
  - Dotter
    Fix a crash pressing Esc on an undocked alignment or greyramp tool.
  - All
    Code reorganisation: the codebase is now in C++ rather than C,
    and a new module 'gbtools' has been created for generic
    utility functions.

Modified:
  head/biology/seqtools/Makefile
  head/biology/seqtools/distinfo
  head/biology/seqtools/pkg-plist

Modified: head/biology/seqtools/Makefile
==============================================================================
--- head/biology/seqtools/Makefile	Wed May  6 20:23:50 2015	(r385560)
+++ head/biology/seqtools/Makefile	Wed May  6 20:30:53 2015	(r385561)
@@ -1,7 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	seqtools
-PORTVERSION=	4.33
+PORTVERSION=	4.34.1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/
 

Modified: head/biology/seqtools/distinfo
==============================================================================
--- head/biology/seqtools/distinfo	Wed May  6 20:23:50 2015	(r385560)
+++ head/biology/seqtools/distinfo	Wed May  6 20:30:53 2015	(r385561)
@@ -1,2 +1,2 @@
-SHA256 (seqtools-4.33.tar.gz) = db60af1dfc8893564b1166fde52154da249c6d50aba2b76412193a75e79618ca
-SIZE (seqtools-4.33.tar.gz) = 5403131
+SHA256 (seqtools-4.34.1.tar.gz) = 77c383d151fd19faa2d24aa3444d4d19527464d0823b58d5a40857fd494a595a
+SIZE (seqtools-4.34.1.tar.gz) = 3267808

Modified: head/biology/seqtools/pkg-plist
==============================================================================
--- head/biology/seqtools/pkg-plist	Wed May  6 20:23:50 2015	(r385560)
+++ head/biology/seqtools/pkg-plist	Wed May  6 20:30:53 2015	(r385561)
@@ -2,6 +2,10 @@ bin/belvu
 bin/blixem
 bin/blixemh
 bin/dotter
+include/gbtools/gbtools.hpp
+include/gbtools/gbtoolsGUI.hpp
+include/gbtools/gbtoolsUtils.hpp
+lib/libgbtools.a
 %%PORTDOCS%%%%DOCSDIR%%/Belvu_manual.pdf
 %%PORTDOCS%%%%DOCSDIR%%/Blixem_manual.pdf
 %%PORTDOCS%%%%DOCSDIR%%/Dotter_manual.pdf