svn commit: r381974 - head/biology/ugene

[Alexey Dokuchaev]

Author: danfe
Date: Mon Mar 23 01:44:43 2015
New Revision: 381974
URL: https://svnweb.freebsd.org/changeset/ports/381974
QAT: https://qat.redports.org/buildarchive/r381974/

Log:
  - Update to version 1.16.1
  - Explicitly list all required Qt components in USE_QT4 instead of relying
    on them being silently picked up through `www/webkit-qt4' dependency
  - Group *_build components together while here
  - Remove one REINPLACE_CMD call that is no longer needed

Modified:
  head/biology/ugene/Makefile
  head/biology/ugene/distinfo
  head/biology/ugene/pkg-plist

Modified: head/biology/ugene/Makefile
==============================================================================
--- head/biology/ugene/Makefile	Mon Mar 23 01:35:36 2015	(r381973)
+++ head/biology/ugene/Makefile	Mon Mar 23 01:44:43 2015	(r381974)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	ugene
-DISTVERSION=	1.16.0
+DISTVERSION=	1.16.1
 CATEGORIES=	biology science
 MASTER_SITES=	http://ugene.unipro.ru/downloads/
 DISTFILES=	${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \
@@ -19,9 +19,10 @@ RUN_DEPENDS=	bash:${PORTSDIR}/shells/bas
 
 USES=		execinfo qmake
 USE_GL=		glu
-USE_QT4=	gui webkit xml svg linguist_build moc_build qmake_build \
-		qtestlib_build rcc_build uic_build imageformats_run \
-		scripttools_build
+USE_QT4=	corelib gui network script webkit xml \
+		linguist_build moc_build qmake_build qtestlib_build \
+		rcc_build scripttools_build uic_build \
+		imageformats_run
 USE_XORG=	xtst
 USE_LDCONFIG=	yes
 INSTALLS_ICONS=	yes
@@ -67,8 +68,6 @@ post-patch:
 		${WRKSRC}/installer/_common_data/ugene
 	@${REINPLACE_CMD} -e '/readproc\.h/d' \
 		${WRKSRC}/src/corelibs/U2Core/src/globals/AppResources.cpp
-	@${REINPLACE_CMD} -e '1000d' \
-		${WRKSRC}/src/plugins_3rdparty/ball/src/include/BALL/DATATYPE/string.h
 	@${REINPLACE_CMD} -e 's|-bit version|& for ${OPSYS}|' \
 		${WRKSRC}/src/ugeneui/src/main_window/AboutDialogController.cpp
 	@${REINPLACE_CMD} -e '/ifdef/s|Q_OS_LINUX|Q_OS_UNIX|' \

Modified: head/biology/ugene/distinfo
==============================================================================
--- head/biology/ugene/distinfo	Mon Mar 23 01:35:36 2015	(r381973)
+++ head/biology/ugene/distinfo	Mon Mar 23 01:44:43 2015	(r381974)
@@ -1,5 +1,5 @@
-SHA256 (ugene/ugene-1.16.0.tar.gz) = ea87019d12d2db07932e510ccd935eed1a59e6ddc71cdee3b21bb7e2fd060878
-SIZE (ugene/ugene-1.16.0.tar.gz) = 20390008
+SHA256 (ugene/ugene-1.16.1.tar.gz) = 5d7dbbe0d2364ad72b947c53bb91cfa4b80eb2e8a1bd061149ce3354858c3074
+SIZE (ugene/ugene-1.16.1.tar.gz) = 20462247
 SHA256 (ugene/QueryDesigner_UserManual.pdf) = d261125f8ad155ae022a47ecf504febfb45ae7740f822be9b0c508219bb732fb
 SIZE (ugene/QueryDesigner_UserManual.pdf) = 824789
 SHA256 (ugene/UniproUGENE_UserManual.pdf) = 94683abe849eecc88735d7748e75f4e30051d1dc8a6b148dbeb3d2ac4ed02a1d

Modified: head/biology/ugene/pkg-plist
==============================================================================
--- head/biology/ugene/pkg-plist	Mon Mar 23 01:35:36 2015	(r381973)
+++ head/biology/ugene/pkg-plist	Mon Mar 23 01:44:43 2015	(r381974)
@@ -1438,6 +1438,7 @@ share/pixmaps/ugene.xpm
 %%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_single_dataset.uwl
 %%DATADIR%%/workflow_samples/NGS/tuxedo/tuxedo_single_dataset_paired.uwl
 %%DATADIR%%/workflow_samples/NGS/tuxedo.uwl
+%%DATADIR%%/workflow_samples/NGS/unmapped_reads.uwl
 %%DATADIR%%/workflow_samples/NGS/variation_annotation.uwl
 %%DATADIR%%/workflow_samples/Sanger sequencing/trim-and-align.uwl
 %%DATADIR%%/workflow_samples/Scenarios/filter_matched.uwl