svn commit: r381151 - in head: archivers/p5-Archive-Rar archivers/p5-Archive-SimpleExtractor archivers/p5-Compress-LZ4 archivers/p5-Compress-LZO archivers/p5-Compress-LZW archivers/p5-Mac-Macbinary...

Adam Weinberger adamw at FreeBSD.org
Thu Mar 12 23:00:13 UTC 2015 

Author: adamw
Date: Thu Mar 12 23:00:02 2015
New Revision: 381151
URL: https://svnweb.freebsd.org/changeset/ports/381151
QAT: https://qat.redports.org/buildarchive/r381151/

Log:
  Some OCD cleanups on some of the perl@ ports.
  
  - Remove dependencies in core
  - Put testing depends in TEST_DEPENDS
  - Remove unnecessary bsd.port.options.mk inclusions
  - Remove checks for Perl versions that no longer exist in the ports tree
  - Sort plists, some of which were so jumbled that I have to assume
    the plist was randomized before committing
  
  A lot of the plist changes in this commit are moving PERL5_MAN3 after
  SITE_PERL. It's repo churn now, but it makes updating the ports later
  far easier.

Modified:
  head/archivers/p5-Archive-Rar/Makefile
  head/archivers/p5-Archive-SimpleExtractor/Makefile
  head/archivers/p5-Compress-LZ4/pkg-plist
  head/archivers/p5-Compress-LZO/pkg-plist
  head/archivers/p5-Compress-LZW/pkg-plist
  head/archivers/p5-Mac-Macbinary/pkg-plist
  head/archivers/p5-PerlIO-via-Bzip2/pkg-plist
  head/astro/p5-Astro-Catalog/pkg-plist
  head/astro/p5-Astro-FITS-Header/pkg-plist
  head/astro/p5-Astro-Hipparcos/Makefile
  head/astro/p5-Astro-satpass/pkg-plist
  head/astro/p5-GPS-Babel/pkg-plist
  head/astro/p5-GPS-OID/pkg-plist
  head/astro/p5-Geo-METAR/pkg-plist
  head/astro/p5-Starlink-AST/pkg-plist
  head/audio/p5-Audio-MPD/Makefile
  head/audio/p5-Audio-MPD/pkg-plist
  head/audio/p5-Audio-Musepack/pkg-plist
  head/audio/p5-Audio-Scan/pkg-plist
  head/audio/p5-Audio-Wav/pkg-plist
  head/audio/p5-CDDB-File/pkg-plist
  head/audio/p5-CDDB/pkg-plist
  head/audio/p5-CDDB_get/pkg-plist
  head/audio/p5-MIDI/pkg-plist
  head/audio/p5-MPEG-ID3v2Tag/pkg-plist
  head/audio/p5-Test-Corpus-Audio-MPD/pkg-plist
  head/audio/p5-libvorbis/Makefile
  head/audio/p5-libvorbis/pkg-plist
  head/audio/p5-tagged/pkg-plist
  head/benchmarks/p5-Benchmark-Stopwatch/pkg-plist
  head/biology/p5-Bio-Graphics/pkg-plist
  head/biology/p5-Bio-MAGETAB/pkg-plist
  head/biology/p5-bioperl-run/Makefile
  head/biology/p5-bioperl/Makefile
  head/biology/p5-bioperl/pkg-plist
  head/chinese/p5-Date-Chinese/pkg-plist
  head/chinese/p5-Lingua-Han-PinYin/pkg-plist
  head/chinese/p5-Lingua-ZH-BPMFConvert/pkg-plist
  head/chinese/p5-Lingua-ZH-Segment/pkg-plist
  head/chinese/p5-Lingua-ZH-TaBE/pkg-plist
  head/chinese/p5-Lingua-ZH-Toke/pkg-plist
  head/comms/p5-Device-Modem/pkg-plist
  head/comms/p5-Device-SerialPort/pkg-plist
  head/comms/p5-Fax-Hylafax-Client/pkg-plist
  head/converters/p5-Convert-ASCII-Armour/pkg-plist
  head/converters/p5-Convert-ASN1/Makefile
  head/converters/p5-Convert-ASN1/pkg-plist
  head/converters/p5-Convert-Bencode_XS/Makefile
  head/converters/p5-Convert-Bencode_XS/pkg-plist
  head/converters/p5-Convert-BinHex/Makefile
  head/converters/p5-Convert-BinHex/pkg-plist
  head/converters/p5-Convert-Binary-C/pkg-plist
  head/converters/p5-Convert-IBM390/pkg-plist
  head/converters/p5-Convert-Morse/pkg-plist
  head/converters/p5-Convert-PEM/pkg-plist
  head/converters/p5-Convert-TNEF/pkg-plist
  head/converters/p5-Convert-UUlib/pkg-plist
  head/converters/p5-Encode-IMAPUTF7/pkg-plist
  head/converters/p5-JSON-Any/pkg-plist
  head/converters/p5-JSON-DWIW/pkg-plist
  head/converters/p5-MIME-Base64/pkg-plist
  head/converters/p5-Text-Iconv/pkg-plist
  head/converters/p5-Unicode-String/Makefile
  head/converters/p5-Unicode-String/pkg-plist
  head/databases/p5-Cache-Memcached-Managed/pkg-plist
  head/databases/p5-Cache-Memcached-XS/Makefile
  head/databases/p5-Cache-Memcached-XS/pkg-plist
  head/databases/p5-Cache-Memcached/pkg-plist
  head/databases/p5-Class-DBI-AbstractSearch/pkg-plist
  head/databases/p5-Class-DBI-AutoLoader/pkg-plist
  head/databases/p5-Class-DBI-BaseDSN/pkg-plist
  head/databases/p5-Class-DBI-FromCGI/pkg-plist
  head/databases/p5-Class-DBI-Loader/Makefile
  head/databases/p5-Class-DBI-Loader/pkg-plist
  head/databases/p5-Class-DBI-Oracle/pkg-plist
  head/databases/p5-Class-DBI-Pager/pkg-plist
  head/databases/p5-Class-DBI-Pg/Makefile
  head/databases/p5-Class-DBI-Pg/pkg-plist
  head/databases/p5-Class-DBI-Replication/pkg-plist
  head/databases/p5-Class-DBI-SAK/pkg-plist
  head/databases/p5-Class-DBI-SQLite/Makefile
  head/databases/p5-Class-DBI-SQLite/pkg-plist
  head/databases/p5-Class-DBI-Sweet/Makefile
  head/databases/p5-Class-DBI-Sweet/pkg-plist
  head/databases/p5-Class-DBI-ToSax/pkg-plist
  head/databases/p5-Class-DBI/Makefile
  head/databases/p5-Class-DBI/pkg-plist
  head/databases/p5-Class-Inflate/pkg-plist
  head/databases/p5-DBD-AnyData/pkg-plist
  head/databases/p5-DBD-CSV/pkg-plist
  head/databases/p5-DBD-Google/pkg-plist
  head/databases/p5-DBD-ODBC/Makefile
  head/databases/p5-DBD-ODBC/pkg-plist
  head/databases/p5-DBD-PgPP/pkg-plist
  head/databases/p5-DBD-SQLite2/pkg-plist
  head/databases/p5-DBD-Sybase/pkg-plist
  head/databases/p5-DBD-XBase/pkg-plist
  head/databases/p5-DBD-mysql/pkg-plist
  head/databases/p5-DBI-Shell/pkg-plist
  head/databases/p5-DBI/Makefile
  head/databases/p5-DBICx-Deploy/pkg-plist
  head/databases/p5-DBICx-TxnInsert/pkg-plist
  head/databases/p5-DBIWrapper/pkg-plist
  head/databases/p5-DBIx-Browse/pkg-plist
  head/databases/p5-DBIx-Class-BitField/pkg-plist
  head/databases/p5-DBIx-Class-Candy/pkg-plist
  head/databases/p5-DBIx-Class-DateTime-Epoch/pkg-plist
  head/databases/p5-DBIx-Class-DigestColumns/pkg-plist
  head/databases/p5-DBIx-Class-DynamicDefault/pkg-plist
  head/databases/p5-DBIx-Class-EncodedColumn/pkg-plist
  head/databases/p5-DBIx-Class-Loader/pkg-plist
  head/databases/p5-DBIx-Class-QueryLog/pkg-plist
  head/databases/p5-DBIx-Class-QueryProfiler/Makefile
  head/databases/p5-DBIx-Class-QueryProfiler/pkg-plist
  head/databases/p5-DBIx-Class-ResultSet-RecursiveUpdate/pkg-plist
  head/databases/p5-DBIx-Class-Schema-PopulateMore/pkg-plist
  head/databases/p5-DBIx-Class-UUIDColumns/pkg-plist
  head/databases/p5-DBIx-Class-WebForm/pkg-plist
  head/databases/p5-DBIx-Class/pkg-plist
  head/databases/p5-DBIx-ContextualFetch/pkg-plist
  head/databases/p5-DBIx-Custom/pkg-plist
  head/databases/p5-DBIx-DBSchema/pkg-plist
  head/databases/p5-DBIx-Dump/pkg-plist
  head/databases/p5-DBIx-Ease/pkg-plist
  head/databases/p5-DBIx-Log4perl/pkg-plist
  head/databases/p5-DBIx-NoSQL/pkg-plist
  head/databases/p5-DBIx-Recordset/pkg-plist
  head/databases/p5-DBIx-Sunny/pkg-plist
  head/databases/p5-DBIx-TableHash/pkg-plist
  head/databases/p5-DBIx-Tree/pkg-plist
  head/databases/p5-DBIx-XHTML_Table/pkg-plist
  head/databases/p5-DWH_File/pkg-plist
  head/databases/p5-Dancer2-Plugin-Database/pkg-plist
  head/databases/p5-Data-Page/pkg-plist
  head/databases/p5-Exception-Class-DBI/pkg-plist
  head/databases/p5-GDBM/pkg-plist
  head/databases/p5-Genezzo/pkg-plist
  head/databases/p5-GraphViz-DBI/pkg-plist
  head/databases/p5-Ima-DBI/pkg-plist
  head/databases/p5-Jifty-DBI/pkg-plist
  head/databases/p5-MLDBM-Sync/pkg-plist
  head/databases/p5-MLDBM/pkg-plist
  head/databases/p5-Oryx/pkg-plist
  head/databases/p5-POE-Component-DBIAgent/pkg-plist
  head/databases/p5-POE-Component-LaDBI/pkg-plist
  head/databases/p5-POE-Component-RRDTool/pkg-plist
  head/databases/p5-Pg/pkg-plist
  head/databases/p5-Prophet/Makefile
  head/databases/p5-Prophet/pkg-plist
  head/databases/p5-RRD-Simple/Makefile
  head/databases/p5-RRD-Simple/pkg-plist
  head/databases/p5-Redis/pkg-plist
  head/databases/p5-ResourcePool-Resource-DBI/pkg-plist
  head/databases/p5-Rose-DB-Object/pkg-plist
  head/databases/p5-Rose-DB/pkg-plist
  head/databases/p5-Rose-DBx-Object-MoreHelpers/pkg-plist
  head/databases/p5-Rose-DBx-Object-Renderer/pkg-plist
  head/databases/p5-SQL-Abstract-Limit/pkg-plist
  head/databases/p5-SQL-Abstract/pkg-plist
  head/databases/p5-SQL-Interp/pkg-plist
  head/databases/p5-SQL-ReservedWords/pkg-plist
  head/databases/p5-SQL-Translator/pkg-plist
  head/databases/p5-Search-InvertedIndex/pkg-plist
  head/databases/p5-Search-Xapian10/pkg-plist
  head/databases/p5-Tangram/pkg-plist
  head/databases/p5-Test-Database/Makefile
  head/databases/p5-Test-Database/pkg-plist
  head/databases/p5-Tie-DBI/pkg-plist
  head/databases/p5-Time-Piece-MySQL/pkg-plist
  head/devel/p5-AI-Prolog/pkg-plist
  head/devel/p5-Algorithm-C3/pkg-plist
  head/devel/p5-Algorithm-Cluster/pkg-plist
  head/devel/p5-Algorithm-Dependency/pkg-plist
  head/devel/p5-Algorithm-Evolutionary/pkg-plist
  head/devel/p5-Algorithm-FloodControl/Makefile
  head/devel/p5-App-SD/Makefile
  head/devel/p5-Attribute-Persistent/Makefile
  head/devel/p5-B-OPCheck/Makefile
  head/devel/p5-Carp-Assert/Makefile
  head/devel/p5-Carp-REPL/Makefile
  head/devel/p5-Class-Contract/Makefile
  head/devel/p5-Class-Contract/pkg-plist
  head/devel/p5-Class-Delegation/Makefile
  head/devel/p5-Class-MakeMethods/Makefile
  head/devel/p5-Code-Perl/Makefile
  head/devel/p5-DateTime-Calendar-Mayan/Makefile
  head/devel/p5-DateTime-Calendar-Pataphysical/Makefile
  head/devel/p5-DateTime-Event-Recurrence/Makefile
  head/devel/p5-DateTime-Format-Builder/Makefile
  head/devel/p5-DateTime-HiRes/Makefile
  head/devel/p5-DateTime-Locale/Makefile
  head/devel/p5-DateTime-Set/Makefile
  head/devel/p5-DateTime/Makefile
  head/devel/p5-Devel-CheckBin/Makefile
  head/devel/p5-Devel-Events-Objects/Makefile
  head/devel/p5-Devel-Profiler/Makefile
  head/devel/p5-Devel-STrace/Makefile
  head/devel/p5-Devel-SmallProf/Makefile
  head/devel/p5-ExtUtils-AutoInstall/Makefile
  head/devel/p5-ExtUtils-MakeMaker/Makefile
  head/devel/p5-Getopt-Compact/Makefile
  head/devel/p5-Git-Repository/Makefile
  head/devel/p5-Git-Wrapper/Makefile
  head/devel/p5-IO-Pipely/Makefile
  head/devel/p5-IOC/Makefile
  head/devel/p5-IPC-SharedCache/Makefile
  head/devel/p5-List-Cycle/Makefile
  head/devel/p5-Locale-Maketext-Fuzzy/Makefile
  head/devel/p5-Locale-Maketext-Lexicon/Makefile
  head/devel/p5-Log-Agent-Logger/Makefile
  head/devel/p5-Lvalue/Makefile
  head/devel/p5-Module-Load-Conditional/Makefile
  head/devel/p5-Moose/Makefile
  head/devel/p5-MooseX-IOC/Makefile
  head/devel/p5-Params-Check/Makefile
  head/devel/p5-Perl-Critic-Deprecated/Makefile
  head/devel/p5-Perl6-Builtins/Makefile
  head/devel/p5-Perl6-Export-Attrs/Makefile
  head/devel/p5-Script-isAperlScript/Makefile
  head/devel/p5-Set-Crontab/Makefile
  head/devel/p5-Set-Infinite/Makefile
  head/devel/p5-Sub-Installer/Makefile
  head/devel/p5-Sub-Prototype/Makefile
  head/devel/p5-Sub-Uplevel/Makefile
  head/devel/p5-Tie-RefHash-Weak/Makefile
  head/devel/p5-Time-Local/Makefile
  head/devel/p5-UI-Dialog/Makefile
  head/devel/p5-prefork/Makefile
  head/devel/p5-self-init/Makefile

Modified: head/archivers/p5-Archive-Rar/Makefile
==============================================================================
--- head/archivers/p5-Archive-Rar/Makefile	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/archivers/p5-Archive-Rar/Makefile	Thu Mar 12 23:00:02 2015	(r381151)
@@ -11,7 +11,7 @@ PKGNAMEPREFIX=	p5-
 MAINTAINER=	perl at FreeBSD.org
 COMMENT=	Interface with the 'rar' command
 
-BUILD_DEPENDS=	rar>=0:${PORTSDIR}/archivers/rar \
+BUILD_DEPENDS=	rar:${PORTSDIR}/archivers/rar \
 		p5-IPC-Run>=0:${PORTSDIR}/devel/p5-IPC-Run
 
 USES=		perl5

Modified: head/archivers/p5-Archive-SimpleExtractor/Makefile
==============================================================================
--- head/archivers/p5-Archive-SimpleExtractor/Makefile	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/archivers/p5-Archive-SimpleExtractor/Makefile	Thu Mar 12 23:00:02 2015	(r381151)
@@ -3,7 +3,7 @@
 
 PORTNAME=	Archive-SimpleExtractor
 PORTVERSION=	0.11
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	archivers perl5
 MASTER_SITES=	CPAN
 PKGNAMEPREFIX=	p5-
@@ -12,11 +12,10 @@ MAINTAINER=	perl at FreeBSD.org
 COMMENT=	Simple module for extract archives
 
 BUILD_DEPENDS=	p5-Archive-Rar>=2.02:${PORTSDIR}/archivers/p5-Archive-Rar \
-		p5-Archive-Tar>=1.54:${PORTSDIR}/archivers/p5-Archive-Tar \
-		p5-Archive-Zip>=1.30:${PORTSDIR}/archivers/p5-Archive-Zip \
-		p5-Module-Load>=0.16:${PORTSDIR}/devel/p5-Module-Load \
-		p5-Module-Load-Conditional>=0.3:${PORTSDIR}/devel/p5-Module-Load-Conditional
+		p5-Archive-Zip>=1.30:${PORTSDIR}/archivers/p5-Archive-Zip
 RUN_DEPENDS:=	${BUILD_DEPENDS}
+TEST_DEPENDS=	p5-Test-Pod>=0:${PORTSDIR}/devel/p5-Test-Pod \
+		p5-Test-Pod-Coverage>=0:${PORTSDIR}/devel/p5-Test-Pod-Coverage
 
 USES=		perl5
 USE_PERL5=	configure

Modified: head/archivers/p5-Compress-LZ4/pkg-plist
==============================================================================
--- head/archivers/p5-Compress-LZ4/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/archivers/p5-Compress-LZ4/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,3 +1,3 @@
-%%PERL5_MAN3%%/Compress::LZ4.3.gz
 %%SITE_ARCH%%/Compress/LZ4.pm
 %%SITE_ARCH%%/auto/Compress/LZ4/LZ4.so
+%%PERL5_MAN3%%/Compress::LZ4.3.gz

Modified: head/archivers/p5-Compress-LZO/pkg-plist
==============================================================================
--- head/archivers/p5-Compress-LZO/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/archivers/p5-Compress-LZO/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,4 +1,4 @@
-%%PERL5_MAN3%%/Compress::LZO.3.gz
 %%SITE_ARCH%%/Compress/LZO.pm
 %%SITE_ARCH%%/auto/Compress/LZO/LZO.so
 %%SITE_ARCH%%/auto/Compress/LZO/autosplit.ix
+%%PERL5_MAN3%%/Compress::LZO.3.gz

Modified: head/archivers/p5-Compress-LZW/pkg-plist
==============================================================================
--- head/archivers/p5-Compress-LZW/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/archivers/p5-Compress-LZW/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,6 +1,6 @@
-%%PERL5_MAN3%%/Compress::LZW.3.gz
-%%PERL5_MAN3%%/Compress::LZW::Compressor.3.gz
-%%PERL5_MAN3%%/Compress::LZW::Decompressor.3.gz
 %%SITE_PERL%%/Compress/LZW.pm
 %%SITE_PERL%%/Compress/LZW/Compressor.pm
 %%SITE_PERL%%/Compress/LZW/Decompressor.pm
+%%PERL5_MAN3%%/Compress::LZW.3.gz
+%%PERL5_MAN3%%/Compress::LZW::Compressor.3.gz
+%%PERL5_MAN3%%/Compress::LZW::Decompressor.3.gz

Modified: head/archivers/p5-Mac-Macbinary/pkg-plist
==============================================================================
--- head/archivers/p5-Mac-Macbinary/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/archivers/p5-Mac-Macbinary/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,2 +1,2 @@
-%%PERL5_MAN3%%/Mac::Macbinary.3.gz
 %%SITE_PERL%%/Mac/Macbinary.pm
+%%PERL5_MAN3%%/Mac::Macbinary.3.gz

Modified: head/archivers/p5-PerlIO-via-Bzip2/pkg-plist
==============================================================================
--- head/archivers/p5-PerlIO-via-Bzip2/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/archivers/p5-PerlIO-via-Bzip2/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,2 +1,2 @@
-%%PERL5_MAN3%%/PerlIO::via::Bzip2.3.gz
 %%SITE_PERL%%/PerlIO/via/Bzip2.pm
+%%PERL5_MAN3%%/PerlIO::via::Bzip2.3.gz

Modified: head/astro/p5-Astro-Catalog/pkg-plist
==============================================================================
--- head/astro/p5-Astro-Catalog/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/astro/p5-Astro-Catalog/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,43 +1,5 @@
 etc/skycat.cfg.sample
 etc/sss.cfg.sample
-%%PERL5_MAN3%%/Astro::Catalog.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::ASCII.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::ASSM.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::Astrom.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::Binary.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::Cluster.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::FINDOFF.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::FITSTable.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::GaiaPick.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::JCMT.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::LCOGTFITSTable.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::Northstar.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::RITMatch.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::SExtractor.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::STL.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::Simple.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::TST.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::UKIRTBS.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::VOTable.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::IO::XY.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Item.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Item::Morphology.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::2MASS.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::CMC.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::GSC.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::MPC.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::SIMBAD.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::Sesame.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::SkyCat.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::SuperCOSMOS.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::USNOA2.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Query::Vizier.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Star.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Star::Morphology.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Transport::REST.3.gz
-%%PERL5_MAN3%%/Astro::Catalog::Transport::WebService.3.gz
-%%PERL5_MAN3%%/Tk::AstroCatalog.3.gz
 %%SITE_PERL%%/Astro/Catalog.pm
 %%SITE_PERL%%/Astro/Catalog/IO/ASCII.pm
 %%SITE_PERL%%/Astro/Catalog/IO/ASSM.pm
@@ -76,3 +38,41 @@ etc/sss.cfg.sample
 %%SITE_PERL%%/Astro/Catalog/Transport/REST.pm
 %%SITE_PERL%%/Astro/Catalog/Transport/WebService.pm
 %%SITE_PERL%%/Tk/AstroCatalog.pm
+%%PERL5_MAN3%%/Astro::Catalog.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::ASCII.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::ASSM.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::Astrom.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::Binary.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::Cluster.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::FINDOFF.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::FITSTable.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::GaiaPick.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::JCMT.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::LCOGTFITSTable.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::Northstar.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::RITMatch.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::SExtractor.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::STL.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::Simple.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::TST.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::UKIRTBS.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::VOTable.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::IO::XY.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Item.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Item::Morphology.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::2MASS.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::CMC.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::GSC.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::MPC.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::SIMBAD.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::Sesame.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::SkyCat.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::SuperCOSMOS.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::USNOA2.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Query::Vizier.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Star.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Star::Morphology.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Transport::REST.3.gz
+%%PERL5_MAN3%%/Astro::Catalog::Transport::WebService.3.gz
+%%PERL5_MAN3%%/Tk::AstroCatalog.3.gz

Modified: head/astro/p5-Astro-FITS-Header/pkg-plist
==============================================================================
--- head/astro/p5-Astro-FITS-Header/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/astro/p5-Astro-FITS-Header/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,12 +1,12 @@
-%%PERL5_MAN3%%/Astro::FITS::Header.3.gz
-%%PERL5_MAN3%%/Astro::FITS::Header::AST.3.gz
-%%PERL5_MAN3%%/Astro::FITS::Header::CFITSIO.3.gz
-%%PERL5_MAN3%%/Astro::FITS::Header::GSD.3.gz
-%%PERL5_MAN3%%/Astro::FITS::Header::Item.3.gz
-%%PERL5_MAN3%%/Astro::FITS::Header::NDF.3.gz
 %%SITE_PERL%%/Astro/FITS/Header.pm
 %%SITE_PERL%%/Astro/FITS/Header/AST.pm
 %%SITE_PERL%%/Astro/FITS/Header/CFITSIO.pm
 %%SITE_PERL%%/Astro/FITS/Header/GSD.pm
 %%SITE_PERL%%/Astro/FITS/Header/Item.pm
 %%SITE_PERL%%/Astro/FITS/Header/NDF.pm
+%%PERL5_MAN3%%/Astro::FITS::Header.3.gz
+%%PERL5_MAN3%%/Astro::FITS::Header::AST.3.gz
+%%PERL5_MAN3%%/Astro::FITS::Header::CFITSIO.3.gz
+%%PERL5_MAN3%%/Astro::FITS::Header::GSD.3.gz
+%%PERL5_MAN3%%/Astro::FITS::Header::Item.3.gz
+%%PERL5_MAN3%%/Astro::FITS::Header::NDF.3.gz

Modified: head/astro/p5-Astro-Hipparcos/Makefile
==============================================================================
--- head/astro/p5-Astro-Hipparcos/Makefile	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/astro/p5-Astro-Hipparcos/Makefile	Thu Mar 12 23:00:02 2015	(r381151)
@@ -3,7 +3,7 @@
 
 PORTNAME=	Astro-Hipparcos
 PORTVERSION=	0.09
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	astro perl5
 MASTER_SITES=	CPAN
 PKGNAMEPREFIX=	p5-
@@ -11,8 +11,7 @@ PKGNAMEPREFIX=	p5-
 MAINTAINER=	perl at FreeBSD.org
 COMMENT=	Perl extension for reading the Hipparcos star catalog
 
-BUILD_DEPENDS=	p5-ExtUtils-XSpp>=0.06:${PORTSDIR}/devel/p5-ExtUtils-XSpp \
-		p5-ExtUtils-ParseXS>=2.22:${PORTSDIR}/devel/p5-ExtUtils-ParseXS
+BUILD_DEPENDS=	p5-ExtUtils-XSpp>=0.06:${PORTSDIR}/devel/p5-ExtUtils-XSpp
 
 MAKE_ARGS+=	CC="${CXX}"
 USES=		perl5

Modified: head/astro/p5-Astro-satpass/pkg-plist
==============================================================================
--- head/astro/p5-Astro-satpass/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/astro/p5-Astro-satpass/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,14 +1,4 @@
 bin/satpass
-%%PERL5_MAN3%%/Astro::Coord::ECI.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::Mixin.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::Moon.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::OVERVIEW.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::Star.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::Sun.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::TLE.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::TLE::Iridium.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::TLE::Set.3.gz
-%%PERL5_MAN3%%/Astro::Coord::ECI::Utils.3.gz
 %%SITE_PERL%%/Astro/Coord/ECI.pm
 %%SITE_PERL%%/Astro/Coord/ECI/Mixin.pm
 %%SITE_PERL%%/Astro/Coord/ECI/Moon.pm
@@ -19,4 +9,14 @@ bin/satpass
 %%SITE_PERL%%/Astro/Coord/ECI/TLE/Iridium.pm
 %%SITE_PERL%%/Astro/Coord/ECI/TLE/Set.pm
 %%SITE_PERL%%/Astro/Coord/ECI/Utils.pm
+%%PERL5_MAN3%%/Astro::Coord::ECI.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::Mixin.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::Moon.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::OVERVIEW.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::Star.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::Sun.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::TLE.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::TLE::Iridium.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::TLE::Set.3.gz
+%%PERL5_MAN3%%/Astro::Coord::ECI::Utils.3.gz
 man/man1/satpass.1.gz

Modified: head/astro/p5-GPS-Babel/pkg-plist
==============================================================================
--- head/astro/p5-GPS-Babel/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/astro/p5-GPS-Babel/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,2 +1,2 @@
-%%PERL5_MAN3%%/GPS::Babel.3.gz
 %%SITE_PERL%%/GPS/Babel.pm
+%%PERL5_MAN3%%/GPS::Babel.3.gz

Modified: head/astro/p5-GPS-OID/pkg-plist
==============================================================================
--- head/astro/p5-GPS-OID/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/astro/p5-GPS-OID/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,2 +1,2 @@
-%%PERL5_MAN3%%/GPS::OID.3.gz
 %%SITE_PERL%%/GPS/OID.pm
+%%PERL5_MAN3%%/GPS::OID.3.gz

Modified: head/astro/p5-Geo-METAR/pkg-plist
==============================================================================
--- head/astro/p5-Geo-METAR/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/astro/p5-Geo-METAR/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,2 +1,2 @@
-%%PERL5_MAN3%%/Geo::METAR.3.gz
 %%SITE_PERL%%/Geo/METAR.pm
+%%PERL5_MAN3%%/Geo::METAR.3.gz

Modified: head/astro/p5-Starlink-AST/pkg-plist
==============================================================================
--- head/astro/p5-Starlink-AST/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/astro/p5-Starlink-AST/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,9 +1,9 @@
-%%PERL5_MAN3%%/Starlink::AST.3.gz
-%%PERL5_MAN3%%/Starlink::AST::PGPLOT.3.gz
-%%PERL5_MAN3%%/Starlink::AST::Tk.3.gz
-%%PERL5_MAN3%%/Starlink::AST::PLplot.3.gz
 %%SITE_ARCH%%/auto/Starlink/AST/AST.so
-%%SITE_ARCH%%/Starlink/AST/Tk.pm
 %%SITE_ARCH%%/Starlink/AST/PGPLOT.pm
 %%SITE_ARCH%%/Starlink/AST/PLplot.pm
+%%SITE_ARCH%%/Starlink/AST/Tk.pm
 %%SITE_ARCH%%/Starlink/AST.pm
+%%PERL5_MAN3%%/Starlink::AST.3.gz
+%%PERL5_MAN3%%/Starlink::AST::PGPLOT.3.gz
+%%PERL5_MAN3%%/Starlink::AST::PLplot.3.gz
+%%PERL5_MAN3%%/Starlink::AST::Tk.3.gz

Modified: head/audio/p5-Audio-MPD/Makefile
==============================================================================
--- head/audio/p5-Audio-MPD/Makefile	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-Audio-MPD/Makefile	Thu Mar 12 23:00:02 2015	(r381151)
@@ -19,8 +19,8 @@ BUILD_DEPENDS=	p5-Audio-MPD-Common>=0:${
 		p5-Moose>=0:${PORTSDIR}/devel/p5-Moose \
 		p5-MooseX-Has-Sugar>=0:${PORTSDIR}/devel/p5-MooseX-Has-Sugar \
 		p5-MooseX-SemiAffordanceAccessor>=0:${PORTSDIR}/devel/p5-MooseX-SemiAffordanceAccessor \
-		p5-Proc-Daemon>=0:${PORTSDIR}/devel/p5-Proc-Daemon \
-		p5-Scalar-List-Utils>=0:${PORTSDIR}/lang/p5-Scalar-List-Utils
+		p5-MooseX-Types>=0:${PORTSDIR}/devel/p5-MooseX-Types \
+		p5-Proc-Daemon>=0:${PORTSDIR}/devel/p5-Proc-Daemon
 RUN_DEPENDS:=	${BUILD_DEPENDS}
 TEST_DEPENDS=	p5-Test-Corpus-Audio-MPD>=1.113282:${PORTSDIR}/audio/p5-Test-Corpus-Audio-MPD
 

Modified: head/audio/p5-Audio-MPD/pkg-plist
==============================================================================
--- head/audio/p5-Audio-MPD/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-Audio-MPD/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,12 +1,12 @@
 bin/mpd-dynamic
 bin/mpd-rate
-%%PERL5_MAN3%%/Audio::MPD.3.gz
-%%PERL5_MAN3%%/Audio::MPD::Collection.3.gz
-%%PERL5_MAN3%%/Audio::MPD::Playlist.3.gz
-%%PERL5_MAN3%%/Audio::MPD::Types.3.gz
 %%SITE_PERL%%/Audio/MPD.pm
 %%SITE_PERL%%/Audio/MPD/Collection.pm
 %%SITE_PERL%%/Audio/MPD/Playlist.pm
 %%SITE_PERL%%/Audio/MPD/Types.pm
+%%PERL5_MAN3%%/Audio::MPD.3.gz
+%%PERL5_MAN3%%/Audio::MPD::Collection.3.gz
+%%PERL5_MAN3%%/Audio::MPD::Playlist.3.gz
+%%PERL5_MAN3%%/Audio::MPD::Types.3.gz
 man/man1/mpd-dynamic.1.gz
 man/man1/mpd-rate.1.gz

Modified: head/audio/p5-Audio-Musepack/pkg-plist
==============================================================================
--- head/audio/p5-Audio-Musepack/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-Audio-Musepack/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,5 +1,5 @@
-%%PERL5_MAN3%%/Audio::APE.3.gz
-%%PERL5_MAN3%%/Audio::Musepack.3.gz
 %%SITE_PERL%%/Audio/APE.pm
 %%SITE_PERL%%/Audio/APETags.pm
 %%SITE_PERL%%/Audio/Musepack.pm
+%%PERL5_MAN3%%/Audio::APE.3.gz
+%%PERL5_MAN3%%/Audio::Musepack.3.gz

Modified: head/audio/p5-Audio-Scan/pkg-plist
==============================================================================
--- head/audio/p5-Audio-Scan/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-Audio-Scan/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,3 +1,3 @@
-%%PERL5_MAN3%%/Audio::Scan.3.gz
 %%SITE_ARCH%%/Audio/Scan.pm
 %%SITE_ARCH%%/auto/Audio/Scan/Scan.so
+%%PERL5_MAN3%%/Audio::Scan.3.gz

Modified: head/audio/p5-Audio-Wav/pkg-plist
==============================================================================
--- head/audio/p5-Audio-Wav/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-Audio-Wav/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,8 +1,8 @@
-%%PERL5_MAN3%%/Audio::Wav.3.gz
-%%PERL5_MAN3%%/Audio::Wav::Read.3.gz
-%%PERL5_MAN3%%/Audio::Wav::Write.3.gz
 %%SITE_PERL%%/Audio/Wav.pm
 %%SITE_PERL%%/Audio/Wav/Read.pm
 %%SITE_PERL%%/Audio/Wav/Tools.pm
 %%SITE_PERL%%/Audio/Wav/Write.pm
 %%SITE_PERL%%/Audio/Wav/Write/Header.pm
+%%PERL5_MAN3%%/Audio::Wav.3.gz
+%%PERL5_MAN3%%/Audio::Wav::Read.3.gz
+%%PERL5_MAN3%%/Audio::Wav::Write.3.gz

Modified: head/audio/p5-CDDB-File/pkg-plist
==============================================================================
--- head/audio/p5-CDDB-File/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-CDDB-File/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,2 +1,2 @@
-%%PERL5_MAN3%%/CDDB::File.3.gz
 %%SITE_PERL%%/CDDB/File.pm
+%%PERL5_MAN3%%/CDDB::File.3.gz

Modified: head/audio/p5-CDDB/pkg-plist
==============================================================================
--- head/audio/p5-CDDB/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-CDDB/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,2 +1,2 @@
-%%PERL5_MAN3%%/CDDB.3.gz
 %%SITE_PERL%%/CDDB.pm
+%%PERL5_MAN3%%/CDDB.3.gz

Modified: head/audio/p5-CDDB_get/pkg-plist
==============================================================================
--- head/audio/p5-CDDB_get/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-CDDB_get/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,7 +1,7 @@
 bin/cddb.pl
-%%PERL5_MAN3%%/CDDB_get.3.gz
 %%SITE_PERL%%/CDDB_cache.pm
 %%SITE_PERL%%/CDDB_get.pm
 %%SITE_PERL%%/auto/CDDB_cache/autosplit.ix
 %%SITE_PERL%%/auto/CDDB_get/autosplit.ix
 %%SITE_PERL%%/cddb.pl
+%%PERL5_MAN3%%/CDDB_get.3.gz

Modified: head/audio/p5-MIDI/pkg-plist
==============================================================================
--- head/audio/p5-MIDI/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-MIDI/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,10 +1,3 @@
-%%PERL5_MAN3%%/MIDI.3.gz
-%%PERL5_MAN3%%/MIDI::Event.3.gz
-%%PERL5_MAN3%%/MIDI::Filespec.3.gz
-%%PERL5_MAN3%%/MIDI::Opus.3.gz
-%%PERL5_MAN3%%/MIDI::Score.3.gz
-%%PERL5_MAN3%%/MIDI::Simple.3.gz
-%%PERL5_MAN3%%/MIDI::Track.3.gz
 %%SITE_PERL%%/MIDI.pm
 %%SITE_PERL%%/MIDI/Event.pm
 %%SITE_PERL%%/MIDI/Filespec.pod
@@ -12,3 +5,10 @@
 %%SITE_PERL%%/MIDI/Score.pm
 %%SITE_PERL%%/MIDI/Simple.pm
 %%SITE_PERL%%/MIDI/Track.pm
+%%PERL5_MAN3%%/MIDI.3.gz
+%%PERL5_MAN3%%/MIDI::Event.3.gz
+%%PERL5_MAN3%%/MIDI::Filespec.3.gz
+%%PERL5_MAN3%%/MIDI::Opus.3.gz
+%%PERL5_MAN3%%/MIDI::Score.3.gz
+%%PERL5_MAN3%%/MIDI::Simple.3.gz
+%%PERL5_MAN3%%/MIDI::Track.3.gz

Modified: head/audio/p5-MPEG-ID3v2Tag/pkg-plist
==============================================================================
--- head/audio/p5-MPEG-ID3v2Tag/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-MPEG-ID3v2Tag/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,2 +1,2 @@
-%%PERL5_MAN3%%/MPEG::ID3v2Tag.3.gz
 %%SITE_PERL%%/MPEG/ID3v2Tag.pm
+%%PERL5_MAN3%%/MPEG::ID3v2Tag.3.gz

Modified: head/audio/p5-Test-Corpus-Audio-MPD/pkg-plist
==============================================================================
--- head/audio/p5-Test-Corpus-Audio-MPD/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-Test-Corpus-Audio-MPD/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,4 +1,3 @@
-%%PERL5_MAN3%%/Test::Corpus::Audio::MPD.3.gz
 %%SITE_PERL%%/Test/Corpus/Audio/MPD.pm
 %%SITE_PERL%%/auto/share/dist/Test-Corpus-Audio-MPD/mpd.conf.template
 %%SITE_PERL%%/auto/share/dist/Test-Corpus-Audio-MPD/music/dir1/title-artist-album.ogg
@@ -7,3 +6,4 @@
 %%SITE_PERL%%/auto/share/dist/Test-Corpus-Audio-MPD/music/title-artist-album-genre.ogg
 %%SITE_PERL%%/auto/share/dist/Test-Corpus-Audio-MPD/music/title.ogg
 %%SITE_PERL%%/auto/share/dist/Test-Corpus-Audio-MPD/playlists/test.m3u
+%%PERL5_MAN3%%/Test::Corpus::Audio::MPD.3.gz

Modified: head/audio/p5-libvorbis/Makefile
==============================================================================
--- head/audio/p5-libvorbis/Makefile	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-libvorbis/Makefile	Thu Mar 12 23:00:02 2015	(r381151)
@@ -15,7 +15,6 @@ COMMENT=	Perl extension for Ogg Vorbis s
 
 LIB_DEPENDS=	libvorbis.so:${PORTSDIR}/audio/libvorbis
 
-
 USES=		perl5
 USE_PERL5=	configure
 

Modified: head/audio/p5-libvorbis/pkg-plist
==============================================================================
--- head/audio/p5-libvorbis/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-libvorbis/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,4 +1,4 @@
-%%PERL5_MAN3%%/Ogg::Vorbis.3.gz
 %%SITE_ARCH%%/Ogg/Vorbis.pm
 %%SITE_ARCH%%/auto/Ogg/Vorbis/Vorbis.so
 %%SITE_ARCH%%/auto/Ogg/Vorbis/autosplit.ix
+%%PERL5_MAN3%%/Ogg::Vorbis.3.gz

Modified: head/audio/p5-tagged/pkg-plist
==============================================================================
--- head/audio/p5-tagged/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/audio/p5-tagged/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,9 +1,9 @@
+%%SITE_PERL%%/MP3/Tag.pm
+%%SITE_PERL%%/MP3/Tag/File.pm
+%%SITE_PERL%%/MP3/Tag/ID3v1.pm
+%%SITE_PERL%%/MP3/Tag/ID3v2.pm
 %%PERL5_MAN3%%/MP3::Tag.3.gz
 %%PERL5_MAN3%%/MP3::Tag::File.3.gz
 %%PERL5_MAN3%%/MP3::Tag::ID3v1.3.gz
 %%PERL5_MAN3%%/MP3::Tag::ID3v2-Data.3.gz
 %%PERL5_MAN3%%/MP3::Tag::ID3v2.3.gz
-%%SITE_PERL%%/MP3/Tag.pm
-%%SITE_PERL%%/MP3/Tag/File.pm
-%%SITE_PERL%%/MP3/Tag/ID3v1.pm
-%%SITE_PERL%%/MP3/Tag/ID3v2.pm

Modified: head/benchmarks/p5-Benchmark-Stopwatch/pkg-plist
==============================================================================
--- head/benchmarks/p5-Benchmark-Stopwatch/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/benchmarks/p5-Benchmark-Stopwatch/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -1,3 +1,3 @@
-%%PERL5_MAN3%%/Benchmark::Stopwatch.3.gz
 %%SITE_PERL%%/Benchmark/Stopwatch.pm
 %%SITE_PERL%%/Benchmark/example.pl
+%%PERL5_MAN3%%/Benchmark::Stopwatch.3.gz

Modified: head/biology/p5-Bio-Graphics/pkg-plist
==============================================================================
--- head/biology/p5-Bio-Graphics/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/biology/p5-Bio-Graphics/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -4,106 +4,6 @@ bin/frend.pl
 bin/glyph_help.pl
 bin/render_msa.pl
 bin/search_overview.pl
-%%PERL5_MAN3%%/Bio::Graphics.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::ConfiguratorI.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::DrawTransmembrane.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Feature.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::FeatureBase.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::FeatureDir.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::FeatureFile.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::FeatureFile::Iterator.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::Factory.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::alignment.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::allele_tower.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::anchored_arrow.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::arrow.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::box.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::broken_line.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::cds.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::christmas_arrow.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::crossbox.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::dashed_line.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::decorated_gene.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::decorated_transcript.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::diamond.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::dna.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::dot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::dumbbell.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::ellipse.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::ex.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::extending_arrow.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::fb_shmiggle.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::fixedwidth.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::flag.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::gene.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::generic.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::graded_segments.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::group.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::hat.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::heat_map.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::heat_map_ideogram.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::heterogeneous_segments.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::hidden.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::hybrid_plot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::ideogram.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::image.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::lightning.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::line.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::merge_parts.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::merged_alignment.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::minmax.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::operon.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::oval.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::pairplot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::pentagram.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::phylo_align.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::pinsertion.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::primers.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::processed_transcript.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::protein.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::ragged_ends.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::rainbow_gene.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::redgreen_box.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::redgreen_segment.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::repeating_shape.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::rndrect.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::ruler_arrow.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::saw_teeth.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::scale.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::segmented_keyglyph.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::segments.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::so_transcript.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::span.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::spectrogram.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::splice_site.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::stackedplot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::ternary_plot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::text_in_box.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::three_letters.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::tic_tac_toe.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::toomany.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::trace.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::track.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::transcript.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::transcript2.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::translation.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::triangle.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::two_bolts.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::vista_plot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::wave.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::weighted_arrow.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::whiskerplot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_box.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_density.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_xyplot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Glyph::xyplot.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Panel.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Pictogram.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::RendererI.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Util.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Wiggle.3.gz
-%%PERL5_MAN3%%/Bio::Graphics::Wiggle::Loader.3.gz
 %%SITE_PERL%%/Bio/Graphics.pm
 %%SITE_PERL%%/Bio/Graphics/ConfiguratorI.pm
 %%SITE_PERL%%/Bio/Graphics/DrawTransmembrane.pm
@@ -212,6 +112,106 @@ bin/search_overview.pl
 %%SITE_PERL%%/Bio/Graphics/Util.pm
 %%SITE_PERL%%/Bio/Graphics/Wiggle.pm
 %%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm
+%%PERL5_MAN3%%/Bio::Graphics.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::ConfiguratorI.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::DrawTransmembrane.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Feature.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::FeatureBase.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::FeatureDir.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::FeatureFile.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::FeatureFile::Iterator.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::Factory.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::alignment.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::allele_tower.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::anchored_arrow.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::arrow.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::box.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::broken_line.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::cds.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::christmas_arrow.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::crossbox.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::dashed_line.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::decorated_gene.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::decorated_transcript.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::diamond.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::dna.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::dot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::dumbbell.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::ellipse.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::ex.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::extending_arrow.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::fb_shmiggle.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::fixedwidth.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::flag.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::gene.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::generic.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::graded_segments.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::group.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::hat.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::heat_map.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::heat_map_ideogram.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::heterogeneous_segments.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::hidden.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::hybrid_plot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::ideogram.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::image.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::lightning.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::line.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::merge_parts.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::merged_alignment.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::minmax.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::operon.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::oval.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::pairplot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::pentagram.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::phylo_align.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::pinsertion.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::primers.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::processed_transcript.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::protein.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::ragged_ends.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::rainbow_gene.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::redgreen_box.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::redgreen_segment.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::repeating_shape.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::rndrect.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::ruler_arrow.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::saw_teeth.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::scale.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::segmented_keyglyph.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::segments.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::so_transcript.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::span.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::spectrogram.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::splice_site.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::stackedplot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::ternary_plot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::text_in_box.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::three_letters.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::tic_tac_toe.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::toomany.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::trace.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::track.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::transcript.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::transcript2.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::translation.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::triangle.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::two_bolts.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::vista_plot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::wave.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::weighted_arrow.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::whiskerplot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_box.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_density.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::wiggle_xyplot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Glyph::xyplot.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Panel.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Pictogram.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::RendererI.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Util.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Wiggle.3.gz
+%%PERL5_MAN3%%/Bio::Graphics::Wiggle::Loader.3.gz
 man/man1/contig_draw.pl.1.gz
 man/man1/feature_draw.pl.1.gz
 man/man1/frend.pl.1.gz

Modified: head/biology/p5-Bio-MAGETAB/pkg-plist
==============================================================================
--- head/biology/p5-Bio-MAGETAB/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/biology/p5-Bio-MAGETAB/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -5,59 +5,59 @@ bin/unload_magetab_namespace.pl
 %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/DataMatrix.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/TagValueFile.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/Tabfile.pm
-%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/SDRF.pm
-%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/IDF.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Reader/ADF.pm
+%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/IDF.pm
+%%SITE_PERL%%/Bio/MAGETAB/Util/Reader/SDRF.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Writer/ADF.pm
-%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/Tabfile.pm
+%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/GraphViz.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Writer/IDF.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Writer/SDRF.pm
-%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/GraphViz.pm
+%%SITE_PERL%%/Bio/MAGETAB/Util/Writer/Tabfile.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Writer.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Reader.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Builder.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/DBLoader.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/RewriteAE.pm
 %%SITE_PERL%%/Bio/MAGETAB/Util/Persistence.pm
-%%SITE_PERL%%/Bio/MAGETAB/Material.pm
-%%SITE_PERL%%/Bio/MAGETAB/Types.pm
-%%SITE_PERL%%/Bio/MAGETAB/ControlledTerm.pm
-%%SITE_PERL%%/Bio/MAGETAB/Contact.pm
-%%SITE_PERL%%/Bio/MAGETAB/DesignElement.pm
-%%SITE_PERL%%/Bio/MAGETAB/Investigation.pm
+%%SITE_PERL%%/Bio/MAGETAB/ArrayDesign.pm
+%%SITE_PERL%%/Bio/MAGETAB/Assay.pm
+%%SITE_PERL%%/Bio/MAGETAB/BaseClass.pm
 %%SITE_PERL%%/Bio/MAGETAB/Comment.pm
-%%SITE_PERL%%/Bio/MAGETAB/Publication.pm
-%%SITE_PERL%%/Bio/MAGETAB/Sample.pm
+%%SITE_PERL%%/Bio/MAGETAB/CompositeElement.pm
+%%SITE_PERL%%/Bio/MAGETAB/Contact.pm
+%%SITE_PERL%%/Bio/MAGETAB/ControlledTerm.pm
+%%SITE_PERL%%/Bio/MAGETAB/DataAcquisition.pm
 %%SITE_PERL%%/Bio/MAGETAB/DataFile.pm
-%%SITE_PERL%%/Bio/MAGETAB/ArrayDesign.pm
-%%SITE_PERL%%/Bio/MAGETAB/Event.pm
+%%SITE_PERL%%/Bio/MAGETAB/DataMatrix.pm
+%%SITE_PERL%%/Bio/MAGETAB/DatabaseEntry.pm
+%%SITE_PERL%%/Bio/MAGETAB/Data.pm
+%%SITE_PERL%%/Bio/MAGETAB/DesignElement.pm
 %%SITE_PERL%%/Bio/MAGETAB/Edge.pm
+%%SITE_PERL%%/Bio/MAGETAB/Event.pm
+%%SITE_PERL%%/Bio/MAGETAB/Extract.pm
+%%SITE_PERL%%/Bio/MAGETAB/FactorValue.pm
+%%SITE_PERL%%/Bio/MAGETAB/Factor.pm
+%%SITE_PERL%%/Bio/MAGETAB/Feature.pm
+%%SITE_PERL%%/Bio/MAGETAB/Investigation.pm
+%%SITE_PERL%%/Bio/MAGETAB/LabeledExtract.pm
+%%SITE_PERL%%/Bio/MAGETAB/Material.pm
 %%SITE_PERL%%/Bio/MAGETAB/MatrixColumn.pm
-%%SITE_PERL%%/Bio/MAGETAB/Normalization.pm
-%%SITE_PERL%%/Bio/MAGETAB/ParameterValue.pm
-%%SITE_PERL%%/Bio/MAGETAB/DataAcquisition.pm
-%%SITE_PERL%%/Bio/MAGETAB/Assay.pm
-%%SITE_PERL%%/Bio/MAGETAB/SDRFRow.pm
-%%SITE_PERL%%/Bio/MAGETAB/SDRF.pm
-%%SITE_PERL%%/Bio/MAGETAB/Data.pm
 %%SITE_PERL%%/Bio/MAGETAB/MatrixRow.pm
-%%SITE_PERL%%/Bio/MAGETAB/Extract.pm
 %%SITE_PERL%%/Bio/MAGETAB/Measurement.pm
-%%SITE_PERL%%/Bio/MAGETAB/TermSource.pm
-%%SITE_PERL%%/Bio/MAGETAB/CompositeElement.pm
-%%SITE_PERL%%/Bio/MAGETAB/BaseClass.pm
 %%SITE_PERL%%/Bio/MAGETAB/Node.pm
+%%SITE_PERL%%/Bio/MAGETAB/Normalization.pm
+%%SITE_PERL%%/Bio/MAGETAB/ParameterValue.pm
+%%SITE_PERL%%/Bio/MAGETAB/ProtocolApplication.pm
+%%SITE_PERL%%/Bio/MAGETAB/ProtocolParameter.pm
 %%SITE_PERL%%/Bio/MAGETAB/Protocol.pm
+%%SITE_PERL%%/Bio/MAGETAB/Publication.pm
 %%SITE_PERL%%/Bio/MAGETAB/Reporter.pm
-%%SITE_PERL%%/Bio/MAGETAB/Factor.pm
-%%SITE_PERL%%/Bio/MAGETAB/ProtocolApplication.pm
-%%SITE_PERL%%/Bio/MAGETAB/LabeledExtract.pm
-%%SITE_PERL%%/Bio/MAGETAB/Feature.pm
-%%SITE_PERL%%/Bio/MAGETAB/DatabaseEntry.pm
+%%SITE_PERL%%/Bio/MAGETAB/SDRFRow.pm
+%%SITE_PERL%%/Bio/MAGETAB/SDRF.pm
+%%SITE_PERL%%/Bio/MAGETAB/Sample.pm
 %%SITE_PERL%%/Bio/MAGETAB/Source.pm
-%%SITE_PERL%%/Bio/MAGETAB/ProtocolParameter.pm
-%%SITE_PERL%%/Bio/MAGETAB/FactorValue.pm
-%%SITE_PERL%%/Bio/MAGETAB/DataMatrix.pm
+%%SITE_PERL%%/Bio/MAGETAB/TermSource.pm
+%%SITE_PERL%%/Bio/MAGETAB/Types.pm
 %%SITE_PERL%%/Bio/MAGETAB.pm
 %%PERL5_MAN3%%/Bio::MAGETAB.3.gz
 %%PERL5_MAN3%%/Bio::MAGETAB::ArrayDesign.3.gz

Modified: head/biology/p5-bioperl-run/Makefile
==============================================================================
--- head/biology/p5-bioperl-run/Makefile	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/biology/p5-bioperl-run/Makefile	Thu Mar 12 23:00:02 2015	(r381151)
@@ -41,13 +41,13 @@ SHEBANG_FILES=	scripts/bioperl_applicati
 OPTIONS_DEFINE=	DOCS
 
 post-build:
-	cd ${WRKSRC} && ${PERL} ./Build manifest
+	(cd ${WRKSRC} && ${PERL} ./Build manifest)
 
 post-install:
 .for i in bioperl_application_installer multi_hmmsearch panalysis papplmaker run_neighbor run_protdist
 	${CP} ${WRKSRC}/scripts/${i}.PLS ${STAGEDIR}${PREFIX}/bin/bp_${i}
 .endfor
-	${MKDIR} ${STAGEDIR}${DOCSDIR}
+	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 .for doc in AUTHORS Changes INSTALL.PROGRAMS README
 	${INSTALL_DATA} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR}
 .endfor

Modified: head/biology/p5-bioperl/Makefile
==============================================================================
--- head/biology/p5-bioperl/Makefile	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/biology/p5-bioperl/Makefile	Thu Mar 12 23:00:02 2015	(r381151)
@@ -3,7 +3,7 @@
 
 PORTNAME=	bioperl
 PORTVERSION=	1.6.924
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 MASTER_SITE_SUBDIR=	CPAN:CJFIELDS
@@ -16,51 +16,47 @@ COMMENT=	Collection of Perl modules for 
 LICENSE=	ART10 GPLv1
 LICENSE_COMB=	dual
 
-BUILD_DEPENDS=	p5-Text-Tabs+Wrap>=0:${PORTSDIR}/textproc/p5-Text-Tabs+Wrap \
+BUILD_DEPENDS=	p5-Algorithm-Munkres>=0:${PORTSDIR}/math/p5-Algorithm-Munkres \
+		p5-Array-Compare>=0:${PORTSDIR}/misc/p5-Array-Compare \
 		p5-Bio-ASN1-EntrezGene>=0:${PORTSDIR}/biology/p5-Bio-ASN1-EntrezGene \
 		p5-Class-AutoClass>=0:${PORTSDIR}/devel/p5-Class-AutoClass \
+		p5-Clone>=0:${PORTSDIR}/devel/p5-Clone \
+		p5-Convert-Binary-C>=0:${PORTSDIR}/converters/p5-Convert-Binary-C \
 		p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \
-		p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \
-		p5-Data-Stag>=0:${PORTSDIR}/devel/p5-Data-Stag \
+		p5-DBD-mysql>=0:${PORTSDIR}/databases/p5-DBD-mysql \
+		p5-Error>=0:${PORTSDIR}/lang/p5-Error \
+		p5-GD>=0:${PORTSDIR}/graphics/p5-GD \
 		p5-GD-SVG>=0:${PORTSDIR}/graphics/p5-GD-SVG \
 		p5-Graph>=0:${PORTSDIR}/math/p5-Graph \
-		p5-libwww>=0:${PORTSDIR}/www/p5-libwww \
+		p5-GraphViz>=0:${PORTSDIR}/graphics/p5-GraphViz \
+		p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \
+		p5-HTML-TableExtract>=2:${PORTSDIR}/www/p5-HTML-TableExtract \
 		p5-IO-stringy>=0:${PORTSDIR}/devel/p5-IO-stringy \
 		p5-IO-String>=0:${PORTSDIR}/devel/p5-IO-String \
-		p5-libwww>=0:${PORTSDIR}/www/p5-libwww \
+		p5-Math-Random>=0:${PORTSDIR}/math/p5-Math-Random \
+		p5-PostScript>=0:${PORTSDIR}/print/p5-PostScript \
 		p5-SOAP-Lite>=0:${PORTSDIR}/net/p5-SOAP-Lite \
+		p5-Set-Scalar>=0:${PORTSDIR}/devel/p5-Set-Scalar \
+		p5-Sort-Naturally>=1:${PORTSDIR}/textproc/p5-Sort-Naturally \
+		p5-Spreadsheet-ParseExcel>=0:${PORTSDIR}/textproc/p5-Spreadsheet-ParseExcel \
 		p5-SVG>=0:${PORTSDIR}/textproc/p5-SVG \
 		p5-SVG-Graph>=0:${PORTSDIR}/graphics/p5-SVG-Graph \
+		p5-Test-Most>=0:${PORTSDIR}/devel/p5-Test-Most \
 		p5-Text-Shellwords>=0:${PORTSDIR}/textproc/p5-Text-Shellwords \
+		p5-Text-Tabs+Wrap>=0:${PORTSDIR}/textproc/p5-Text-Tabs+Wrap \
+		p5-URI>=0:${PORTSDIR}/net/p5-URI \
 		p5-XML-DOM>=0:${PORTSDIR}/textproc/p5-XML-DOM \
 		p5-XML-DOM-XPath>=0:${PORTSDIR}/textproc/p5-XML-DOM-XPath \
-		p5-libxml>=0:${PORTSDIR}/textproc/p5-libxml \
-		p5-XML-SAX>=0:${PORTSDIR}/textproc/p5-XML-SAX \
+		p5-XML-LibXML>=0:${PORTSDIR}/textproc/p5-XML-LibXML \
+		p5-XML-Parser>=0:${PORTSDIR}/textproc/p5-XML-Parser \
 		p5-XML-SAX>=0:${PORTSDIR}/textproc/p5-XML-SAX \
 		p5-XML-SAX-Writer>=0:${PORTSDIR}/textproc/p5-XML-SAX-Writer \
+		p5-XML-Simple>=2:${PORTSDIR}/textproc/p5-XML-Simple \
 		p5-XML-Twig>=0:${PORTSDIR}/textproc/p5-XML-Twig \
 		p5-XML-Writer>=0:${PORTSDIR}/textproc/p5-XML-Writer \
-		p5-Clone>=0:${PORTSDIR}/devel/p5-Clone \
-		p5-DBD-mysql>=0:${PORTSDIR}/databases/p5-DBD-mysql \
-		p5-GD>=0:${PORTSDIR}/graphics/p5-GD \
-		p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \
-		p5-HTML-Parser>=0:${PORTSDIR}/www/p5-HTML-Parser \
-		p5-XML-Parser>=0:${PORTSDIR}/textproc/p5-XML-Parser \
-		p5-Spreadsheet-ParseExcel>=0:${PORTSDIR}/textproc/p5-Spreadsheet-ParseExcel \
-		p5-Convert-Binary-C>=0:${PORTSDIR}/converters/p5-Convert-Binary-C \
-		p5-Algorithm-Munkres>=0:${PORTSDIR}/math/p5-Algorithm-Munkres \
-		p5-Array-Compare>=0:${PORTSDIR}/misc/p5-Array-Compare \
-		p5-GraphViz>=0:${PORTSDIR}/graphics/p5-GraphViz \
-		p5-Math-Random>=0:${PORTSDIR}/math/p5-Math-Random \
-		p5-PostScript>=0:${PORTSDIR}/print/p5-PostScript \
-		p5-Set-Scalar>=0:${PORTSDIR}/devel/p5-Set-Scalar \
-		p5-URI>=0:${PORTSDIR}/net/p5-URI \
-		p5-Test-Most>=0:${PORTSDIR}/devel/p5-Test-Most \
-		p5-HTML-TableExtract>=2:${PORTSDIR}/www/p5-HTML-TableExtract \
-		p5-Sort-Naturally>=1:${PORTSDIR}/textproc/p5-Sort-Naturally \
-		p5-XML-Simple>=2:${PORTSDIR}/textproc/p5-XML-Simple \
 		p5-YAML>=0:${PORTSDIR}/textproc/p5-YAML \
-		p5-Error>=0:${PORTSDIR}/lang/p5-Error
+		p5-libwww>=0:${PORTSDIR}/www/p5-libwww \
+		p5-libxml>=0:${PORTSDIR}/textproc/p5-libxml
 
 RUN_DEPENDS:=	${BUILD_DEPENDS}
 
@@ -75,19 +71,15 @@ PGTEST_BUILD_DEPENDS=	p5-DBD-Pg>=3:${POR
 SQLITETEST_RUN_DEPENDS=	p5-DBD-SQLite>=1:${PORTSDIR}/databases/p5-DBD-SQLite
 SQLITETEST_BUILD_DEPENDS=	p5-DBD-SQLite>=1:${PORTSDIR}/databases/p5-DBD-SQLite
 
-.include <bsd.port.options.mk>
-
 post-install:
-	${MKDIR} ${STAGEDIR}${DATADIR}
+	@${MKDIR} ${STAGEDIR}${DATADIR}
 	${CP} -R ${WRKSRC}/scripts ${WRKSRC}/models ${STAGEDIR}${DATADIR}
-	${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
+	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 	${CP} -R ${WRKSRC}/examples/* ${STAGEDIR}${EXAMPLESDIR}
-.if ${PORT_OPTIONS:MDOCS}
-	${MKDIR} ${STAGEDIR}${DOCSDIR}
+	@${MKDIR} ${STAGEDIR}${DOCSDIR}
 .for doc in AUTHORS BUGS Changes DEPENDENCIES DEPRECATED INSTALL LICENSE MANIFEST README
 	${INSTALL_MAN} ${WRKSRC}/${doc} ${STAGEDIR}${DOCSDIR}
 .endfor
 	${CP} -R ${WRKSRC}/doc ${STAGEDIR}${DOCSDIR}
-.endif
 
 .include <bsd.port.mk>

Modified: head/biology/p5-bioperl/pkg-plist
==============================================================================
--- head/biology/p5-bioperl/pkg-plist	Thu Mar 12 21:47:24 2015	(r381150)
+++ head/biology/p5-bioperl/pkg-plist	Thu Mar 12 23:00:02 2015	(r381151)
@@ -64,820 +64,6 @@ bin/bp_taxonomy2tree.pl
 bin/bp_translate_seq.pl
 bin/bp_tree2pag.pl
 bin/bp_unflatten_seq.pl
-%%PERL5_MAN3%%/Bio::Align::AlignI.3.gz
-%%PERL5_MAN3%%/Bio::Align::DNAStatistics.3.gz
-%%PERL5_MAN3%%/Bio::Align::Graphics.3.gz
-%%PERL5_MAN3%%/Bio::Align::PairwiseStatistics.3.gz
-%%PERL5_MAN3%%/Bio::Align::ProteinStatistics.3.gz
-%%PERL5_MAN3%%/Bio::Align::StatisticsI.3.gz
-%%PERL5_MAN3%%/Bio::Align::Utilities.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::Handler::GenericAlignHandler.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::arp.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::bl2seq.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::clustalw.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::emboss.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::fasta.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::largemultifasta.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::maf.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::mase.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::mega.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::meme.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::metafasta.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::msf.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::nexml.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::nexus.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::pfam.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::phylip.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::po.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::proda.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::prodom.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::psi.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::selex.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::stockholm.3.gz
-%%PERL5_MAN3%%/Bio::AlignIO::xmfa.3.gz
-%%PERL5_MAN3%%/Bio::AnalysisI.3.gz
-%%PERL5_MAN3%%/Bio::AnalysisParserI.3.gz
-%%PERL5_MAN3%%/Bio::AnalysisResultI.3.gz
-%%PERL5_MAN3%%/Bio::AnnotatableI.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::AnnotationFactory.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::Collection.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::Comment.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::DBLink.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::OntologyTerm.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::Reference.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::Relation.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::SimpleValue.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::StructuredValue.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::TagTree.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::Target.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::Tree.3.gz
-%%PERL5_MAN3%%/Bio::Annotation::TypeManager.3.gz
-%%PERL5_MAN3%%/Bio::AnnotationCollectionI.3.gz
-%%PERL5_MAN3%%/Bio::AnnotationI.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::Contig.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::ContigAnalysis.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::IO.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::IO::ace.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::IO::bowtie.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::IO::maq.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::IO::phrap.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::IO::sam.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::IO::tigr.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::Scaffold.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::ScaffoldI.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::Singlet.3.gz
-%%PERL5_MAN3%%/Bio::Assembly::Tools::ContigSpectrum.3.gz
-%%PERL5_MAN3%%/Bio::Cluster::ClusterFactory.3.gz
-%%PERL5_MAN3%%/Bio::Cluster::FamilyI.3.gz
-%%PERL5_MAN3%%/Bio::Cluster::SequenceFamily.3.gz
-%%PERL5_MAN3%%/Bio::Cluster::UniGene.3.gz
-%%PERL5_MAN3%%/Bio::Cluster::UniGeneI.3.gz
-%%PERL5_MAN3%%/Bio::ClusterI.3.gz
-%%PERL5_MAN3%%/Bio::ClusterIO.3.gz
-%%PERL5_MAN3%%/Bio::ClusterIO::dbsnp.3.gz
-%%PERL5_MAN3%%/Bio::ClusterIO::unigene.3.gz
-%%PERL5_MAN3%%/Bio::CodonUsage::IO.3.gz
-%%PERL5_MAN3%%/Bio::CodonUsage::Table.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::Chain.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::Collection.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::ExtrapolatingPair.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::GeneMapper.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::Graph.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::MapperI.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::Pair.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::Result.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::Result::Gap.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::Result::Match.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::ResultI.3.gz
-%%PERL5_MAN3%%/Bio::Coordinate::Utils.3.gz
-%%PERL5_MAN3%%/Bio::DB::Ace.3.gz
-%%PERL5_MAN3%%/Bio::DB::BioFetch.3.gz
-%%PERL5_MAN3%%/Bio::DB::CUTG.3.gz
-%%PERL5_MAN3%%/Bio::DB::DBFetch.3.gz
-%%PERL5_MAN3%%/Bio::DB::EMBL.3.gz
-%%PERL5_MAN3%%/Bio::DB::EntrezGene.3.gz
-%%PERL5_MAN3%%/Bio::DB::Expression.3.gz
-%%PERL5_MAN3%%/Bio::DB::Expression::geo.3.gz
-%%PERL5_MAN3%%/Bio::DB::Failover.3.gz
-%%PERL5_MAN3%%/Bio::DB::Fasta.3.gz
-%%PERL5_MAN3%%/Bio::DB::FileCache.3.gz
-%%PERL5_MAN3%%/Bio::DB::Flat.3.gz
-%%PERL5_MAN3%%/Bio::DB::Flat::BDB.3.gz
-%%PERL5_MAN3%%/Bio::DB::Flat::BDB::embl.3.gz
-%%PERL5_MAN3%%/Bio::DB::Flat::BDB::fasta.3.gz
-%%PERL5_MAN3%%/Bio::DB::Flat::BDB::genbank.3.gz
-%%PERL5_MAN3%%/Bio::DB::Flat::BDB::swiss.3.gz
-%%PERL5_MAN3%%/Bio::DB::Flat::BinarySearch.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::ace.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::berkeleydb.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::biofetch.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::biofetch_oracle.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::caching_handle.3.gz
-%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::iterator.3.gz

*** DIFF OUTPUT TRUNCATED AT 1000 LINES ***

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