svn commit: r370764 - head/biology/ugene

[Alexey Dokuchaev]

Author: danfe
Date: Mon Oct 13 11:01:51 2014
New Revision: 370764
URL: https://svnweb.freebsd.org/changeset/ports/370764
QAT: https://qat.redports.org/buildarchive/r370764/

Log:
  Update to version 1.14.2.

Modified:
  head/biology/ugene/Makefile
  head/biology/ugene/distinfo
  head/biology/ugene/pkg-plist

Modified: head/biology/ugene/Makefile
==============================================================================
--- head/biology/ugene/Makefile	Mon Oct 13 10:45:04 2014	(r370763)
+++ head/biology/ugene/Makefile	Mon Oct 13 11:01:51 2014	(r370764)
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	ugene
-DISTVERSION=	1.14.0
-PORTREVISION=	1
+DISTVERSION=	1.14.2
 CATEGORIES=	biology science
 MASTER_SITES=	http://ugene.unipro.ru/downloads/
 DISTFILES=	${DISTNAME}${EXTRACT_SUFX} QueryDesigner_UserManual.pdf \
@@ -75,5 +74,10 @@ post-patch:
 .for x in ugenecl ugeneui plugins_checker
 	@${ECHO_CMD} 'LIBS += -lexecinfo' >> ${WRKSRC}/src/${x}/${x}.pro
 .endfor
+# missing linefeeds at EOF irk gcc4.2
+	@(cd ${WRKSRC}/src && ${FIND} -E . -type f -regex '.*\.(cpp|h)' | \
+	while read f; do if [ "`${TAIL} -c 1 "$$f"`" ]; then \
+		${ECHO_CMD} >&2 "$${f#./} lacks newline at EOF, fixing"; \
+		${ECHO_CMD} >> "$$f"; fi; done)
 
 .include <bsd.port.post.mk>

Modified: head/biology/ugene/distinfo
==============================================================================
--- head/biology/ugene/distinfo	Mon Oct 13 10:45:04 2014	(r370763)
+++ head/biology/ugene/distinfo	Mon Oct 13 11:01:51 2014	(r370764)
@@ -1,5 +1,5 @@
-SHA256 (ugene/ugene-1.14.0.tar.gz) = e54f67d54378fcb375029267bc1ae75aec5e6e4e7c9977184be5865475ef2c42
-SIZE (ugene/ugene-1.14.0.tar.gz) = 19777919
+SHA256 (ugene/ugene-1.14.2.tar.gz) = deea01b9a5386094fa2d7e48db9d529afd9520ed0d6bc5bb2fb40493ae861a3a
+SIZE (ugene/ugene-1.14.2.tar.gz) = 19800763
 SHA256 (ugene/QueryDesigner_UserManual.pdf) = 2add11809ecc3225abfef417ad8d5435fed76a662081f461abb36e3d4b31cfcd
 SIZE (ugene/QueryDesigner_UserManual.pdf) = 824781
 SHA256 (ugene/UniproUGENE_UserManual.pdf) = c4aa20246988978c6b40a06f7753f78d204ee3155cb8876a3d665b9ebf5641db

Modified: head/biology/ugene/pkg-plist
==============================================================================
--- head/biology/ugene/pkg-plist	Mon Oct 13 10:45:04 2014	(r370763)
+++ head/biology/ugene/pkg-plist	Mon Oct 13 11:01:51 2014	(r370764)
@@ -1416,13 +1416,18 @@ share/pixmaps/ugene.xpm
 %%DATADIR%%/workflow_samples/NGS/tuxedo.uwl
 %%DATADIR%%/workflow_samples/Scenarios/extract_consensus.uwl
 %%DATADIR%%/workflow_samples/Scenarios/filter_matched.uwl
+%%DATADIR%%/workflow_samples/Scenarios/find_inverted_repeats.uwl
 %%DATADIR%%/workflow_samples/Scenarios/find_sequences.uwl
 %%DATADIR%%/workflow_samples/Scenarios/gene_by_gene_report.uwl
 %%DATADIR%%/workflow_samples/Scenarios/merge_sequence_annotation.uwl
+%%DATADIR%%/workflow_samples/Scenarios/remote_blasting.uwl
+%%DATADIR%%/workflow_samples/Scenarios/translate_seq_and_compl.uwl
 %%DATADIR%%/workflow_samples/Transcriptomics/SearchTFBS.uwl
 %%DATADIR%%/workflow_samples/users/CASAVA FASTQ filter.usa
 %%DATADIR%%/workflow_samples/users/Dump sequence info.usa
 %%DATADIR%%/workflow_samples/users/FASTQ Trimmer.usa
+%%DATADIR%%/workflow_samples/users/Get the first half of sequence.usa
+%%DATADIR%%/workflow_samples/users/Get the second half of sequence.usa
 %%DATADIR%%/workflow_samples/users/LinkData Fetch.usa
 %%DATADIR%%/workflow_samples/users/QualityFilter.usa
 @dirrm %%DATADIR%%/workflow_samples/users