svn commit: r372070 - head/biology/phylip

[Pawel Pekala]

Author: pawel
Date: Sun Nov  2 14:13:59 2014
New Revision: 372070
URL: https://svnweb.freebsd.org/changeset/ports/372070
QAT: https://qat.redports.org/buildarchive/r372070/

Log:
  - Update to version 3.696
  - Add LICENSE, no EXAMPLES included in distfile now
  - Rework pkg-descr, remove author info - it's available on homepage
  
  PR:		194163
  Submitted by:	tkato432 at yahoo.com

Modified:
  head/biology/phylip/Makefile
  head/biology/phylip/distinfo
  head/biology/phylip/pkg-descr

Modified: head/biology/phylip/Makefile
==============================================================================
--- head/biology/phylip/Makefile	Sun Nov  2 13:59:24 2014	(r372069)
+++ head/biology/phylip/Makefile	Sun Nov  2 14:13:59 2014	(r372070)
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	phylip
-PORTVERSION=	3.695
-PORTREVISION=	3
+PORTVERSION=	3.696
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://evolution.gs.washington.edu/phylip/download/
@@ -11,13 +10,16 @@ MASTER_SITES=	http://evolution.gs.washin
 MAINTAINER=	ports at FreeBSD.org
 COMMENT=	Phylogeny Inference Package
 
+LICENSE=	BSD2CLAUSE
+LICENSE_FILES=	${WRKSRC}/COPYRIGHT
+
 BUILD_DEPENDS=	bash:${PORTSDIR}/shells/bash
 
 BUILD_WRKSRC=	${WRKSRC}/src
 INSTALL_WRKSRC=	${WRKSRC}/src
 
-USE_XORG=	x11 xaw xt
 USES=		gmake
+USE_XORG=	x11 xaw xt
 MAKEFILE=	Makefile.unx
 MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \
 		DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \
@@ -25,28 +27,23 @@ MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS} 
 USE_LDCONFIG=	yes
 
 PORTDOCS=	*
-PORTEXAMPLES=	*
-
-OPTIONS_DEFINE=	DOCS EXAMPLES
 
-pre-install:
-	@(cd ${WRKSRC}/src && ${STRIP_CMD} libdrawtree.so libdrawgram.so)
+OPTIONS_DEFINE=	DOCS
 
 post-install:
 	@cd ${WRKSRC}/exe && \
 		${FIND} . -maxdepth 1 -not -type d -not -name '*.jar' \
 		-not -name '*.unx' -not -name 'font*' -not -name '*.so' \
-		-exec ${INSTALL_PROGRAM} "{}" "${STAGEDIR}${PREFIX}/bin/{}" \;
+		| ${XARGS} -J % ${INSTALL_PROGRAM} % ${STAGEDIR}${PREFIX}/bin
 	@cd ${WRKSRC}/exe && \
 		${FIND} . -maxdepth 1 -not -type d -name "*.so" \
-		-exec ${INSTALL_DATA} "{}" "${STAGEDIR}${PREFIX}/lib/{}" \;
+		| ${XARGS} -J % ${INSTALL_LIB} % ${STAGEDIR}${PREFIX}/lib
 	@${MKDIR} ${STAGEDIR}${DATADIR}
 	@cd ${WRKSRC}/exe && \
 		${FIND} . -maxdepth 1 -not -type d -name 'font*' \
-		-exec ${INSTALL_DATA} "{}" "${STAGEDIR}${DATADIR}/{}" \;
+		| ${XARGS} -J % ${INSTALL_DATA} % ${STAGEDIR}${DATADIR}
 	@${MKDIR} ${STAGEDIR}${DOCSDIR}
-	@(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR})
-	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
-	@(cd ${WRKSRC}/exe && ${COPYTREE_SHARE} testdata ${STAGEDIR}${EXAMPLESDIR})
+	@(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . \
+		${STAGEDIR}${DOCSDIR})
 
 .include <bsd.port.mk>

Modified: head/biology/phylip/distinfo
==============================================================================
--- head/biology/phylip/distinfo	Sun Nov  2 13:59:24 2014	(r372069)
+++ head/biology/phylip/distinfo	Sun Nov  2 14:13:59 2014	(r372070)
@@ -1,2 +1,2 @@
-SHA256 (phylip-3.695.tar.gz) = d843ecee0d6bcf57f4f23dc8ef064a668907cc69b4edd7626ff7afdd8d0de370
-SIZE (phylip-3.695.tar.gz) = 4364684
+SHA256 (phylip-3.696.tar.gz) = cd0a452ca51922142ad06d585e2ef98565536a227cbd2bd47a2243af72c84a06
+SIZE (phylip-3.696.tar.gz) = 3955721

Modified: head/biology/phylip/pkg-descr
==============================================================================
--- head/biology/phylip/pkg-descr	Sun Nov  2 13:59:24 2014	(r372069)
+++ head/biology/phylip/pkg-descr	Sun Nov  2 14:13:59 2014	(r372070)
@@ -1,17 +1,8 @@
-              PHYLIP - Phylogeny Inference Package (version 3.6)
-
 PHYLIP (the PHYLogeny Inference Package) is a package of programs for
-inferring phylogenies (evolutionary trees).  Methods that are
-available in the package include parsimony, distance matrix, and
-likelihood methods, including bootstrapping and consensus trees. Data
-types that can be handled include molecular sequences, gene
-frequencies, restriction sites, distance matrices, and 0/1 discrete
-characters.
-
- Joe Felsenstein
- Department of Genetics
- University of Washington
- Box 357360
- Seattle, Washington 98195-7360, U.S.A.
+inferring phylogenies (evolutionary trees). Methods that are available
+in the package include parsimony, distance matrix, and likelihood
+methods, including bootstrapping and consensus trees. Data types that
+can be handled include molecular sequences, gene frequencies,
+restriction sites, distance matrices, and 0/1 discrete characters.
 
 WWW: http://evolution.genetics.washington.edu/phylip.html