svn commit: r348042 - in head/biology: garlic mafft mopac mummer muscle paml phylip pymol velvet xmolwt

[Martin Wilke]

Author: miwi
Date: Thu Mar 13 07:41:34 2014
New Revision: 348042
URL: http://svnweb.freebsd.org/changeset/ports/348042
QAT: https://qat.redports.org/buildarchive/r348042/

Log:
  - Convert USE_GMAKE to USES

Modified:
  head/biology/garlic/Makefile
  head/biology/mafft/Makefile
  head/biology/mopac/Makefile
  head/biology/mummer/Makefile
  head/biology/muscle/Makefile
  head/biology/paml/Makefile
  head/biology/phylip/Makefile
  head/biology/pymol/Makefile
  head/biology/velvet/Makefile
  head/biology/xmolwt/Makefile

Modified: head/biology/garlic/Makefile
==============================================================================
--- head/biology/garlic/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/garlic/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -14,7 +14,7 @@ EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
 MAINTAINER=	maho at FreeBSD.org
 COMMENT=	Molecular viewer, editor, and visualization program
 
-USE_GMAKE=	yes
+USES=		gmake
 USE_XORG=	x11
 ALL_TARGET=	# empty
 

Modified: head/biology/mafft/Makefile
==============================================================================
--- head/biology/mafft/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/mafft/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -18,7 +18,7 @@ RUN_DEPENDS=	lav2ps:${PORTSDIR}/biology/
 WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}-without-extensions
 BUILD_WRKSRC=	${WRKSRC}/core
 
-USE_GMAKE=	yes
+USES=		gmake
 
 MAN1=		mafft.1 mafft-homologs.1
 

Modified: head/biology/mopac/Makefile
==============================================================================
--- head/biology/mopac/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/mopac/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -14,7 +14,7 @@ COMMENT=	Semi-empirical (MNDO, etc.) mol
 
 LIB_DEPENDS=	libf2c.so:${PORTSDIR}/lang/f2c
 
-USE_GMAKE=	yes
+USES=		gmake
 USE_AUTOTOOLS=	aclocal automake autoconf libtool
 ACLOCAL_ARGS=	-I ${LOCALBASE}/share/aclocal
 AUTOMAKE_ARGS=	--add-missing --copy

Modified: head/biology/mummer/Makefile
==============================================================================
--- head/biology/mummer/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/mummer/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -10,7 +10,7 @@ DISTNAME=	MUMmer${PORTVERSION}
 MAINTAINER=	sylvio at FreeBSD.org
 COMMENT=	A modular system for rapid whole genome alignment
 
-USE_GMAKE=	yes
+USES=		gmake
 
 PROGRAMS=	annotate combineMUMs delta-filter gaps \
 		mgaps mummer repeat-match show-aligns \

Modified: head/biology/muscle/Makefile
==============================================================================
--- head/biology/muscle/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/muscle/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -22,7 +22,7 @@ COMMENT=	Multiple Sequence Comparison by
 
 FETCH_ARGS=	-A
 
-USE_GMAKE=	yes
+USES=		gmake
 USE_DOS2UNIX=	*.cpp
 
 PLIST_FILES=	bin/muscle

Modified: head/biology/paml/Makefile
==============================================================================
--- head/biology/paml/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/paml/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -10,7 +10,7 @@ DISTNAME=	${PORTNAME}${PORTVERSION}
 MAINTAINER=	wen at FreeBSD.org
 COMMENT=	Phylogenetic Analysis by Maximum Likelihood (PAML)
 
-USE_GMAKE=	YES
+USES=		gmake
 WRKSRC=		${WRKDIR}/${PORTNAME}44/src
 MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS}"
 

Modified: head/biology/phylip/Makefile
==============================================================================
--- head/biology/phylip/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/phylip/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -19,7 +19,7 @@ BUILD_WRKSRC=	${WRKSRC}/src
 INSTALL_WRKSRC=	${WRKSRC}/src
 
 USE_XORG=	x11 xaw xt
-USE_GMAKE=	yes
+USES=		gmake
 MAKEFILE=	Makefile.unx
 MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \
 		DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \

Modified: head/biology/pymol/Makefile
==============================================================================
--- head/biology/pymol/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/pymol/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -22,7 +22,7 @@ SVNREVISION=	3978
 USE_BZIP2=	yes
 WRKSRC=		${WRKDIR}/pymol-${PORTVERSION}
 USE_GL=		glut glew
-USE_GMAKE=	yes
+USES=		gmake
 USE_PYTHON=	yes
 PLIST_SUB=	PYMOL_VER=${VERSION} PYTHON_VER=${PYTHON_VER}
 

Modified: head/biology/velvet/Makefile
==============================================================================
--- head/biology/velvet/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/velvet/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -11,14 +11,13 @@ EXTRACT_SUFX=	.tgz
 MAINTAINER=	mzaki at m.u-tokyo.ac.jp
 COMMENT=	Sequence assembler for very short reads
 
-USE_GMAKE=	yes
 ALL_TARGET=	default
 
 MAXKMERLENGTH?=	31
 VELVET_CATEGORIES?=	2
 MAKE_ENV+=	MAXKMERLENGTH=${MAXKMERLENGTH} CATEGORIES=${VELVET_CATEGORIES}
 
-USES=		perl5
+USES=		perl5 gmake
 USE_PERL5=	run
 
 BINARIES=	velvetg velveth

Modified: head/biology/xmolwt/Makefile
==============================================================================
--- head/biology/xmolwt/Makefile	Thu Mar 13 07:40:26 2014	(r348041)
+++ head/biology/xmolwt/Makefile	Thu Mar 13 07:41:34 2014	(r348042)
@@ -12,7 +12,7 @@ COMMENT=	Calculate atom weight and perce
 
 OPTIONS_DEFINE=	DOCS GTK2
 
-USE_GMAKE=	yes
+USES=		gmake
 MAKEFILE=	Makefile.gtk
 ALL_TARGET=	gmolwt