svn commit: r329819 - head/biology/biococoa
David Chisnall
theraven at FreeBSD.org
Tue Oct 8 18:34:46 UTC 2013
Author: theraven
Date: Tue Oct 8 18:34:45 2013
New Revision: 329819
URL: http://svnweb.freebsd.org/changeset/ports/329819
Log:
Update BioCocoa to the latest release.
Approved by: bapt (mentor)
Modified:
head/biology/biococoa/Makefile
head/biology/biococoa/distinfo
head/biology/biococoa/pkg-plist
Modified: head/biology/biococoa/Makefile
==============================================================================
--- head/biology/biococoa/Makefile Tue Oct 8 18:32:05 2013 (r329818)
+++ head/biology/biococoa/Makefile Tue Oct 8 18:34:45 2013 (r329819)
@@ -1,7 +1,7 @@
# $FreeBSD$
PORTNAME= biococoa
-PORTVERSION= 2.2.1
+PORTVERSION= 2.2.2
PORTREVISION= 0
CATEGORIES= biology gnustep
MASTER_SITES= http://bioinformatics.org/biococoa/downloads/ ${MASTER_SITE_DEBIAN}
@@ -21,5 +21,4 @@ USE_GNUSTEP_INSTALL= yes
WRKSRC= ${WRKDIR}/biococoa-${PORTVERSION}
-NO_STAGE= yes
.include <bsd.port.mk>
Modified: head/biology/biococoa/distinfo
==============================================================================
--- head/biology/biococoa/distinfo Tue Oct 8 18:32:05 2013 (r329818)
+++ head/biology/biococoa/distinfo Tue Oct 8 18:34:45 2013 (r329819)
@@ -1,2 +1,2 @@
-SHA256 (biococoa-2.2.1-src.tgz) = f13855e83bd40fb6a16a6d0d04fb669a1b36fcbaea9484a5c894277467a9ae0d
-SIZE (biococoa-2.2.1-src.tgz) = 368512
+SHA256 (biococoa-2.2.2-src.tgz) = 383eea4e04ca584ecf5bc06507996acf193d3b1df9afecaca6fb58cbe41df384
+SIZE (biococoa-2.2.2-src.tgz) = 358850
Modified: head/biology/biococoa/pkg-plist
==============================================================================
--- head/biology/biococoa/pkg-plist Tue Oct 8 18:32:05 2013 (r329818)
+++ head/biology/biococoa/pkg-plist Tue Oct 8 18:34:45 2013 (r329819)
@@ -1,76 +1,70 @@
GNUstep/Local/Library/Frameworks/BioCocoa.framework/BioCocoa
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/BioCocoa
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCAminoAcid.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCAnnotation.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCAtom.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCCachedFastaFile.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCCachedSequenceFile.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCChain.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCCodon.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCCodonDNA.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCCodonRNA.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCDataMatrix.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCFoundation.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCFoundationDefines.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCGeneticCode.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCMCP.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCNucleotide.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCNucleotideDNA.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCNucleotideRNA.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCPairwiseAlignment.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCParseSOFT.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCPlatform.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCPreferences.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCProteinStructure.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCResidue.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSample.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCScoreMatrix.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSecondaryStructure.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSequence.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSequenceAlignment.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSequenceArray.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSequenceCodon.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSequenceReader.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSequenceStructure.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSequenceTool.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSequenceWriter.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSeries.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCStringDefinitions.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSuffixArray.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSymbol.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCSymbolSet.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCToolComplement.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCToolDigest.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCToolHydropathyCalculator.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCToolMassCalculator.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCToolSequenceFinder.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCToolSymbolCounter.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCToolTranslator.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCToolTranslatorDNA.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCUtilData.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers/BCUtilStrings.h
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Resources/Info-gnustep.plist
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Resources/aminoacids.plist
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Resources/nucleotides.plist
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/libBioCocoa.so
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/libBioCocoa.so.%%MAJORVERSION%%
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/libBioCocoa.so.%%VERSION%%
-GNUstep/Local/Library/Frameworks/BioCocoa.framework/libBioCocoa.so
-GNUstep/Local/Library/Libraries/libBioCocoa.so
-GNUstep/Local/Library/Libraries/libBioCocoa.so.%%MAJORVERSION%%
-GNUstep/Local/Library/Libraries/libBioCocoa.so.%%VERSION%%
GNUstep/Local/Library/Frameworks/BioCocoa.framework/Headers
GNUstep/Local/Library/Frameworks/BioCocoa.framework/Resources
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/BioCocoa
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAminoAcid.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAnnotation.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCAtom.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedFastaFile.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCachedSequenceFile.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCChain.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodon.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonDNA.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCCodonRNA.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCDataMatrix.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundation.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCFoundationDefines.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCGeneticCode.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCMCP.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotide.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotideDNA.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCNucleotideRNA.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPairwiseAlignment.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCParseSOFT.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPlatform.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCPreferences.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCProteinStructure.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCResidue.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSample.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCScoreMatrix.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSecondaryStructure.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequence.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceAlignment.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceArray.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceCodon.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceReader.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceStructure.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceTool.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSequenceWriter.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSeries.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCStringDefinitions.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSuffixArray.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSymbol.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCSymbolSet.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolComplement.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolDigest.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolHydropathyCalculator.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolMassCalculator.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolSequenceFinder.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolSymbolCounter.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolTranslator.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCToolTranslatorDNA.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCUtilData.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers/BCUtilStrings.h
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/Info-gnustep.plist
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/aminoacids.plist
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Resources/nucleotides.plist
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/libBioCocoa.so.2.2.2
GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/Current
+GNUstep/Local/Library/Frameworks/BioCocoa.framework/libBioCocoa.so
GNUstep/Local/Library/Headers/BioCocoa
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework
- at dirrm GNUstep/Local/Library/Headers/BioCocoa
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/Current
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Resources
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%/Headers
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/%%MAJORVERSION%%
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework/Resources
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework/Headers
- at dirrm GNUstep/Local/Library/Frameworks/BioCocoa.framework
+GNUstep/Local/Library/Libraries/libBioCocoa.so
+GNUstep/Local/Library/Libraries/libBioCocoa.so.2
+GNUstep/Local/Library/Libraries/libBioCocoa.so.2.2.2
+ at dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Resources
+ at dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2/Headers
+ at dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions/2
+ at dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework/Versions
+ at dirrmtry GNUstep/Local/Library/Frameworks/BioCocoa.framework
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