svn commit: r315145 - head/science/gromacs

[Martin Wilke]

Author: miwi
Date: Sun Mar 24 16:27:23 2013
New Revision: 315145
URL: http://svnweb.freebsd.org/changeset/ports/315145

Log:
  - Update to 4.6.1
  
  PR:		177243
  Submitted by:	ports fury

Modified:
  head/science/gromacs/Makefile
  head/science/gromacs/distinfo
  head/science/gromacs/pkg-plist

Modified: head/science/gromacs/Makefile
==============================================================================
--- head/science/gromacs/Makefile	Sun Mar 24 16:24:56 2013	(r315144)
+++ head/science/gromacs/Makefile	Sun Mar 24 16:27:23 2013	(r315145)
@@ -2,7 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	gromacs
-PORTVERSION=	4.6
+PORTVERSION=	4.6.1
 CATEGORIES=	science
 MASTER_SITES=	ftp://ftp.gromacs.org/pub/gromacs/
 
@@ -22,10 +22,10 @@ GSL_DESC=	Extra analysis using math/gsl
 MPICH_DESC=	MPI support using net/mpich2
 OMPI_DESC=	MPI support using net/openmpi
 
+USES=		cmake
 USE_FORTRAN=	yes
 USE_PERL5=	yes
 USE_PKGCONFIG=	build
-USES=		cmake
 CMAKE_ARGS=	-DBLAS_LIBRARIES:FILEPATH="${BLAS_LIBS}" \
 		-DLAPACK_LIBRARIES:FILEPATH="${LAPACK_LIBS}"
 USE_LDCONFIG=	yes
@@ -127,7 +127,7 @@ post-patch:
 	@${FIND} ${WRKSRC} -name "CMakeLists.txt" | ${XARGS} \
 		${REINPLACE_CMD} -e \
 		's|share/man|man| ; \
-		 s|-lpthread|${PTHREAD_LIBS}| ; \
+		 s|-lpthread|-pthread| ; \
 		 /pkgconfig/s|LIB_INSTALL_DIR}|CMAKE_INSTALL_PREFIX}/libdata|'
 	@${FIND} ${WRKSRC} -name "GMXRC.*" | ${XARGS} ${REINPLACE_CMD} -e \
 		's|LDLIB/pkgconfig|LDLIB/../libdata/pkgconfig| ; \

Modified: head/science/gromacs/distinfo
==============================================================================
--- head/science/gromacs/distinfo	Sun Mar 24 16:24:56 2013	(r315144)
+++ head/science/gromacs/distinfo	Sun Mar 24 16:27:23 2013	(r315145)
@@ -1,2 +1,2 @@
-SHA256 (gromacs-4.6.tar.gz) = f695ea814b10cb9afa8d69241fed703c6e20156bab96ed4b25f817ad85a8dbde
-SIZE (gromacs-4.6.tar.gz) = 10098687
+SHA256 (gromacs-4.6.1.tar.gz) = a0514b2a04ecac7461a67fc8edefa2b8eeaf22a25cd61c3348042dd077b077e6
+SIZE (gromacs-4.6.1.tar.gz) = 9975315

Modified: head/science/gromacs/pkg-plist
==============================================================================
--- head/science/gromacs/pkg-plist	Sun Mar 24 16:24:56 2013	(r315144)
+++ head/science/gromacs/pkg-plist	Sun Mar 24 16:27:23 2013	(r315145)
@@ -343,13 +343,13 @@ include/gromacs/xdrf.h
 include/gromacs/xtcio.h
 include/gromacs/xvgr.h
 lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so
-lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6
+lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8
 lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so
-lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6
+lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8
 lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so
-lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6
+lib/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8
 lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so
-lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.6
+lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.8
 libdata/pkgconfig/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.pc
 libdata/pkgconfig/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.pc
 libdata/pkgconfig/libgmxpreprocess%%SUFFIX_MPI%%%%SUFFIX_D%%.pc
@@ -431,6 +431,8 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%S
 %%DATADIR%%/html/online/g_dipoles.html
 %%DATADIR%%/html/online/g_disre.html
 %%DATADIR%%/html/online/g_dist.html
+%%DATADIR%%/html/online/g_dos.html
+%%DATADIR%%/html/online/g_dyecoupl.html
 %%DATADIR%%/html/online/g_dyndom.html
 %%DATADIR%%/html/online/g_enemat.html
 %%DATADIR%%/html/online/g_energy.html
@@ -440,6 +442,8 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%S
 %%DATADIR%%/html/online/g_hbond.html
 %%DATADIR%%/html/online/g_helix.html
 %%DATADIR%%/html/online/g_helixorient.html
+%%DATADIR%%/html/online/g_hydorder.html
+%%DATADIR%%/html/online/g_kinetics.html
 %%DATADIR%%/html/online/g_lie.html
 %%DATADIR%%/html/online/g_mdmat.html
 %%DATADIR%%/html/online/g_membed.html
@@ -449,7 +453,9 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%S
 %%DATADIR%%/html/online/g_nmeig.html
 %%DATADIR%%/html/online/g_nmens.html
 %%DATADIR%%/html/online/g_nmtraj.html
+%%DATADIR%%/html/online/g_options.html
 %%DATADIR%%/html/online/g_order.html
+%%DATADIR%%/html/online/g_pme_error.html
 %%DATADIR%%/html/online/g_polystat.html
 %%DATADIR%%/html/online/g_potential.html
 %%DATADIR%%/html/online/g_principal.html
@@ -462,6 +468,7 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%S
 %%DATADIR%%/html/online/g_rotacf.html
 %%DATADIR%%/html/online/g_rotmat.html
 %%DATADIR%%/html/online/g_saltbr.html
+%%DATADIR%%/html/online/g_sans.html
 %%DATADIR%%/html/online/g_sas.html
 %%DATADIR%%/html/online/g_select.html
 %%DATADIR%%/html/online/g_sgangle.html