svn commit: r314531 - in head: Mk biology/protomol
Jason Helfman
jgh at FreeBSD.org
Mon Mar 18 11:06:37 UTC 2013
Author: jgh
Date: Mon Mar 18 06:54:39 2013
New Revision: 314531
URL: http://svnweb.freebsd.org/changeset/ports/314531
Log:
- adoption of optionsNG
- trim historical header
- fix mixture of DOCS/EXAMPLES -> EXAMPLES
- add shared description for GLUT to bodm
Approved by: portmgr (miwi)
Modified:
head/Mk/bsd.options.desc.mk
head/biology/protomol/Makefile
head/biology/protomol/pkg-plist
Modified: head/Mk/bsd.options.desc.mk
==============================================================================
--- head/Mk/bsd.options.desc.mk Mon Mar 18 06:50:12 2013 (r314530)
+++ head/Mk/bsd.options.desc.mk Mon Mar 18 06:54:39 2013 (r314531)
@@ -102,6 +102,7 @@ GGI_DESC?= General Graphics Interface
GHOSTSCRIPT_DESC?= Ghostscript support
GIF_DESC?= GIF image format
GLADE_DESC?= Glade interface builder
+GLUT_DESC?= GLUT support
GLX_DESC?= X11 OpenGL rendering
GMP_DESC?= GMP (multiple precision arithmetic)
GNOME_DESC?= GNOME desktop environment
Modified: head/biology/protomol/Makefile
==============================================================================
--- head/biology/protomol/Makefile Mon Mar 18 06:50:12 2013 (r314530)
+++ head/biology/protomol/Makefile Mon Mar 18 06:54:39 2013 (r314531)
@@ -1,7 +1,4 @@
-# New ports collection makefile for: protomol
-# Date created: 5 May 2006
-# Whom: Sangwoo Shim <sangwoos at gmail.com>
-#
+# Created by: Sangwoo Shim <sangwoos at gmail.com>
# $FreeBSD$
PORTNAME= protomol
@@ -10,7 +7,7 @@ PORTREVISION= 8
CATEGORIES= biology
MASTER_SITES= SF/${PORTNAME}/ProtoMol/${PORTVERSION}
DISTNAME= ${PORTNAME}-${PORTVERSION}-tar.gz
-EXTRACT_SUFX= # nada
+EXTRACT_SUFX= # empty
MAINTAINER= sangwoos at gmail.com
COMMENT= OO, component based, framework for molecular dynamics (MD) simulations
@@ -30,18 +27,20 @@ CXXFLAGS+= -L${LOCALBASE}/lib
WRKSRC= ${WRKDIR}/${PORTNAME}
-OPTIONS= GLUT "Use glut" on
+OPTIONS_DEFINE= GLUT
+OPTIONS_DEFAULT= GLUT
.include <bsd.port.pre.mk>
+.include <bsd.port.options.mk>
-.if defined(WITH_GLUT)
+.if ${PORT_OPTIONS:MGLUT}
CONFIGURE_ARGS+= --with-glut=yes
USE_GL= glut
.else
CONFIGURE_ARGS+= --with-glut=no
.endif
-.if !defined(NOPORTDOCS)
+.if ${PORT_OPTIONS:MEXAMPLES}
post-install:
@${MKDIR} ${EXAMPLESDIR}
cd ${WRKSRC}/examples && ${FIND} . | ${EGREP} -v '\.cvsignore' | \
Modified: head/biology/protomol/pkg-plist
==============================================================================
--- head/biology/protomol/pkg-plist Mon Mar 18 06:50:12 2013 (r314530)
+++ head/biology/protomol/pkg-plist Mon Mar 18 06:54:39 2013 (r314531)
@@ -4,125 +4,125 @@ bin/dcd2dcd
bin/iSGProtomol
bin/protomol
bin/xyzviz
-%%PORTDOCS%%%%EXAMPLESDIR%%/coulomb_309/309ca.config
-%%PORTDOCS%%%%EXAMPLESDIR%%/coulomb_309/309ca.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/coulomb_309/309ca.pos.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/coulomb_309/309ca.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.equil.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.7ns.namd
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.equil.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/ala607.pgn
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.namd
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/argon_400/argon.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/argon_400/argon.lf.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/argon_400/argon.npt.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/argon_400/argon.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/argon_400/argon.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/argon_400/argon.vel.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.hmc.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.lf.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.shmc.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.shake.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.ewald.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.mg.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.namd
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.pbc.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/runButaneTests.sh
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/README
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/UA_butane.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/UA_butane.dhmc.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/UA_butane.hmc.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/UA_butane.lf.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/UA_butane.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/UA_butane.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/UA_butane.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/angleSetDHMC
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/cleanOutput.bash
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/dihedralSetDHMC
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/procDihedralFile.awk
-%%PORTDOCS%%%%EXAMPLESDIR%%/butane_4/runButaneResults.sh
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equil.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equil.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equilibrated.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equilibrated.pgn
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/dihedralIndexSet
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.BSplineMOLLY.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.Equilibrium.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.LF.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.LFwDihedralOut.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.PLF.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.Shake.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.testSet
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.water.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/decalanine_66/alanine.water.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/22el.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/22el.pos.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/22el.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/22el.vel.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/electrons_22/el.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/iSGMD_README
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane.trans
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.coor.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.vel.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.xsc
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.coor.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.vel.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.xsc
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/test.tcsh
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/README
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/hmc.Bsp_PME.pb.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/hmc.std.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/lf.Ewald.pb.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/lf.MG.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/lf.PME.pb.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/lf.std.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/lf.std.pb.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/shmc.Bsp_PME.pb.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/shmc.std.pb.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/testset/slf.std.pb.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.vel.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.coor.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.new.pos.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.new.vel.pdb
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_216/water216.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.tip3.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.fluid.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.fluid.pos.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.ice.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.ice.nvt.conf
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.ice.pos.xyz
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.spce.par
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.spce.psf
-%%PORTDOCS%%%%EXAMPLESDIR%%/water_648/water648.tip3.par
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/coulomb_309
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/alanine_dipeptide_water_184x
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/argon_400
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/bpti_water_1101
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/bpti_water_14281
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/butane_4
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/alanine_dipeptide_23
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/decalanine_66
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/electrons_22
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/methane_ethane_xxx
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/testset
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/water_216
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/water_648
-%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/coulomb_309/309ca.config
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/coulomb_309/309ca.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/coulomb_309/309ca.pos.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/coulomb_309/309ca.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.equil.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.7ns.namd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.equil.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/ala607.pgn
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.namd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_water_184x/alanine.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/argon_400/argon.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/argon_400/argon.lf.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/argon_400/argon.npt.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/argon_400/argon.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/argon_400/argon.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/argon_400/argon.vel.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.hmc.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.lf.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_1101/bpti.shmc.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.shake.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.ewald.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.mg.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.namd
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.pbc.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bpti_water_14281/bpti.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/runButaneTests.sh
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/README
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/UA_butane.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/UA_butane.dhmc.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/UA_butane.hmc.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/UA_butane.lf.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/UA_butane.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/UA_butane.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/UA_butane.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/angleSetDHMC
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/cleanOutput.bash
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/dihedralSetDHMC
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/procDihedralFile.awk
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/butane_4/runButaneResults.sh
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equil.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equil.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equilibrated.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/alanine_dipeptide_23/ala_equilibrated.pgn
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/dihedralIndexSet
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.BSplineMOLLY.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.Equilibrium.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.LF.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.LFwDihedralOut.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.PLF.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.Shake.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.testSet
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.water.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/decalanine_66/alanine.water.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/electrons_22/22el.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/electrons_22/22el.pos.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/electrons_22/22el.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/electrons_22/22el.vel.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/electrons_22/el.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/iSGMD_README
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane.trans
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.coor.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.vel.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_100_Pure_Trappe.xsc
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.coor.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.vel.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane_ethane_xxx/ethane_methane_300_Pure_Trappe.xsc
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/test.tcsh
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/README
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/hmc.Bsp_PME.pb.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/hmc.std.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/lf.Ewald.pb.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/lf.MG.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/lf.PME.pb.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/lf.std.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/lf.std.pb.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/shmc.Bsp_PME.pb.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/shmc.std.pb.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/testset/slf.std.pb.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_216/water216.vel.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_216/water216.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_216/water216.coor.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_216/water216.new.pos.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_216/water216.new.vel.pdb
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_216/water216.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_216/water216.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.tip3.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.fluid.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.fluid.pos.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.ice.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.ice.nvt.conf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.ice.pos.xyz
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.spce.par
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.spce.psf
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/water_648/water648.tip3.par
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/coulomb_309
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/alanine_dipeptide_water_184x
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/argon_400
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/bpti_water_1101
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/bpti_water_14281
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/butane_4
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/alanine_dipeptide_23
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/decalanine_66
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/electrons_22
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/methane_ethane_xxx
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/testset
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/water_216
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/water_648
+%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
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