[Bug 252569] [exp-run] update multiple ports

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=252569

--- Comment #2 from Sunpoet Po-Chuan Hsieh <sunpoet at FreeBSD.org> ---
(In reply to Steve Wills from comment #1)

The patch includes gdal with the dependencies, protobuf, py-docutils and
readline. I've tested for a period of time and there's no conflicts among them.
Of course I could split them into multiple exp-run PRs but I feel it's more
convenient for antoine@ to apply the patch.

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