[Bug 240623] graphics/py-geomdl: Update to 5.2.9

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=240623

--- Comment #2 from Loïc Bartoletti <lbartoletti at tuxfamily.org> ---
(In reply to Loïc Bartoletti from comment #0)

Not 10
  * testport: OK (poudriere: 11 12 HEAD, i386 amd64 tested)

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