maintainer-feedback requested: [Bug 217968] math/py-numpy: Possible regression with fortran linkage

[bugzilla-noreply at freebsd.org]

Jason Bacon <bacon4000 at gmail.com> has reassigned Bugzilla Automation
<bugzilla at FreeBSD.org>'s request for maintainer-feedback to FreeBSD Python
<python at FreeBSD.org>:
Bug 217968: math/py-numpy: Possible regression with fortran linkage
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=217968



--- Description ---
The following error started appearing since running pkg upgrade this morning. 
The qiime-test script had been working for the past couple weeks and there have
been no major changes to the qiime port lately.

I can still build and run fortran programs using
-Wl,-rpath,/usr/local/lib/gcc49.

This looks to me like a numpy link error, maybe failing to use rpath to load
the correct libgcc?

Thanks,

    Jason

FreeBSD unixdev.ceas  bacon ~ 403: ./qiime-test qiime-tests/
Traceback (most recent call last):
  File "./all_tests.py", line 10, in <module>
    from qiime.util import (parse_command_line_parameters, get_options_lookup,
  File "/usr/local/lib/python2.7/site-packages/qiime/util.py", line 35, in
<module>
    from numpy import (array, zeros, shape, vstack, ndarray, asarray,
  File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in
<module>
    from . import add_newdocs
  File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13,
in <module>
    from numpy.lib import add_newdoc
  File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8,
in <module>
    from .type_check import *
  File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line
11, in <module>
    import numpy.core.numeric as _nx
  File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line
14, in <module>
    from . import multiarray
ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by
/usr/local/lib/gcc49/libgfortran.so.3 not found