ports/180464: [patch] Update astro/py-pyfits to 3.1.2

Tue Aug 6 08:00:01 UTC 2013

The following reply was made to PR ports/180464; it has been noted by GNATS.

From: wen heping <wenheping at gmail.com>
To: "bug-followup at freebsd.org" <bug-followup at FreeBSD.org>, nwhitehorn at FreeBSD.org
Cc:  
Subject: Re:ports/180464: [patch] Update astro/py-pyfits to 3.1.2
Date: Tue, 6 Aug 2013 15:56:41 +0800

 --001a11c2cbdef7139304e342c3ac
 Content-Type: text/plain; charset=UTF-8

 Hi,

    The build failed on my box, the build log is as below, would you have a
 look of it ?

   Thanks !

 wen

 building py27-pyfits-3.1.2 in directory /usr/local/tinderbox/10.0-head
 build started at Tue Aug  6 07:45:41 UTC 2013
 port directory: /usr/ports/astro/py-pyfits
 building for:  10.0-CURRENT amd64
 maintained by: tonymaher at optusnet.com.au
 ident warning: no id keywords in /usr/ports/astro/py-pyfits/Makefile
 Makefile ident:
 prefixes: LOCALBASE=usr/local PREFIX=/usr/local
 Begin Configuration:
 ---Begin Environment---
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 ARCH=amd64
 PORTOBJFORMAT=elf
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 UNAME_s=FreeBSD
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 TINDERBOX_BUILDING=1
 OSVERSION=1000035
 UNAME_v=FreeBSD 10.0-CURRENT #0: Tue Aug  6 15:43:39 CST 2013
 root at tinderbox.host:/usr/src/sys/magic/kernel/path
 BLOCKSIZE=K
 PORTBUILD_USE_IPV4=YES
 ---End Environment---

 ---Begin OPTIONS List---
 ---End OPTIONS List---

 End Configuration.
 PKG_DEPENDS=pkg-1.1.4_1.txz
 FETCH_DEPENDS=
 PATCH_DEPENDS=
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 BUILD_DEPENDS=lapack-3.4.2.txz blas-3.4.2.txz suitesparse-4.0.2_1.txz
 py27-nose-1.3.0.txz python27-2.7.5_1.txz gcc-4.6.3.txz
 py27-distribute-0.6.35.txz gettext-0.18.3.txz gmp-5.1.2.txz
 mpfr-3.1.2.txz mpc-0.9.txz libiconv-1.14_1.txz binutils-2.23.2.txz
 gcc-ecj-4.5.txz py27-numpy-1.7.0_1,1.txz py27-d2to1-0.2.10.txz
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 py27-distribute-0.6.35.txz gettext-0.18.3.txz gmp-5.1.2.txz
 mpfr-3.1.2.txz mpc-0.9.txz libiconv-1.14_1.txz binutils-2.23.2.txz
 gcc-ecj-4.5.txz py27-numpy-1.7.0_1,1.txz py27-d2to1-0.2.10.txz
 TEST_DEPENDS=
 add_pkg pkg-1.1.4_1.txz
 adding dependencies
 pkg_add pkg-1.1.4_1.txz
 The package management tool is not yet installed on your system.
 Do you want to fetch and install it now? [y/N]: Installing pkg-1.1.4_1... done
 If you are upgrading from the old package format, first run:

   # pkg2ng
 add_pkg
 ================================================================
 ====================<phase 1: make checksum>====================
 ===>   py27-pyfits-3.1.2 depends on file: /usr/local/sbin/pkg - found
 => pyfits-3.1.2.tar.gz doesn't seem to exist in /tmp/distfiles/.
 => Attempting to fetch file:///distcache//pyfits-3.1.2.tar.gz
 pyfits-3.1.2.tar.gz                                      0  B    0  Bps
 ===> Fetching all distfiles required by py27-pyfits-3.1.2 for building
 => SHA256 Checksum OK for pyfits-3.1.2.tar.gz.
 ================================================================
 ====================<phase 2: make extract>====================
 add_pkg
 ===>   py27-pyfits-3.1.2 depends on file: /usr/local/sbin/pkg - found
 ===> Fetching all distfiles required by py27-pyfits-3.1.2 for building
 ===>  Extracting for py27-pyfits-3.1.2
 => SHA256 Checksum OK for pyfits-3.1.2.tar.gz.
 ================================================================
 ====================<phase 3: make patch>====================
 add_pkg
 ===>  Patching for py27-pyfits-3.1.2
 ================================================================
 ====================<phase 4: make build>====================
 add_pkg lapack-3.4.2.txz blas-3.4.2.txz suitesparse-4.0.2_1.txz
 py27-nose-1.3.0.txz python27-2.7.5_1.txz gcc-4.6.3.txz
 py27-distribute-0.6.35.txz gettext-0.18.3.txz gmp-5.1.2.txz
 mpfr-3.1.2.txz mpc-0.9.txz libiconv-1.14_1.txz binutils-2.23.2.txz
 gcc-ecj-4.5.txz py27-numpy-1.7.0_1,1.txz py27-d2to1-0.2.10.txz
 adding dependencies
 pkg_add lapack-3.4.2.txz
 Installing lapack-3.4.2...Installing mpfr-3.1.2...Installing gmp-5.1.2... done
  done
 Installing mpc-0.9... done
 Installing blas-3.4.2...Installing gcc-ecj-4.5... done
 Installing gcc-4.6.3...Installing gettext-0.18.3...Installing
 libiconv-1.14_1... done
  done
 Installing binutils-2.23.2... done
  done
  done
  done
 pkg_add blas-3.4.2.txz
 skipping blas-3.4.2, already added
 pkg_add suitesparse-4.0.2_1.txz
 Installing suitesparse-4.0.2_1... done
 pkg_add py27-nose-1.3.0.txz
 Installing py27-nose-1.3.0...Installing python27-2.7.5_1... done
 Installing py27-distribute-0.6.35... done
 215
 238
  done
 ====
 Note that some of the standard modules are provided as separate
 ports since they require extra dependencies:

 bsddb           databases/py-bsddb
 gdbm            databases/py-gdbm
 sqlite3         databases/py-sqlite3
 tkinter         x11-toolkits/py-tkinter

 Install them as needed.
 ====
 pkg_add python27-2.7.5_1.txz
 skipping python27-2.7.5_1, already added
 pkg_add gcc-4.6.3.txz
 skipping gcc-4.6.3, already added
 pkg_add py27-distribute-0.6.35.txz
 skipping py27-distribute-0.6.35, already added
 pkg_add gettext-0.18.3.txz
 skipping gettext-0.18.3, already added
 pkg_add gmp-5.1.2.txz
 skipping gmp-5.1.2, already added
 pkg_add mpfr-3.1.2.txz
 skipping mpfr-3.1.2, already added
 pkg_add mpc-0.9.txz
 skipping mpc-0.9, already added
 pkg_add libiconv-1.14_1.txz
 skipping libiconv-1.14_1, already added
 pkg_add binutils-2.23.2.txz
 skipping binutils-2.23.2, already added
 pkg_add gcc-ecj-4.5.txz
 skipping gcc-ecj-4.5, already added
 pkg_add py27-numpy-1.7.0_1,1.txz
 Installing py27-numpy-1.7.0_1,1... done
 pkg_add py27-d2to1-0.2.10.txz
 Installing py27-d2to1-0.2.10...238
 263
  done
 ===>   py27-pyfits-3.1.2 depends on file:
 /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found
 ===>   py27-pyfits-3.1.2 depends on package: py27-d2to1>=0 - found
 ===>   py27-pyfits-3.1.2 depends on file:
 /usr/local/bin/easy_install-2.7 - found
 ===>   py27-pyfits-3.1.2 depends on file: /usr/local/bin/python2.7 - found
 ===>  Configuring for py27-pyfits-3.1.2
 Download error on http://pypi.python.org/simple/stsci.distutils/:
 [Errno 8] hostname nor servname provided, or not known -- Some
 packages may not be found!
 Download error on http://pypi.python.org/simple/stsci.distutils/:
 [Errno 8] hostname nor servname provided, or not known -- Some
 packages may not be found!
 Couldn't find index page for 'stsci.distutils' (maybe misspelled?)
 Download error on http://pypi.python.org/simple/: [Errno 8] hostname
 nor servname provided, or not known -- Some packages may not be found!
 No local packages or download links found for stsci.distutils>=0.3
 Traceback (most recent call last):
   File "setup.py", line 15, in <module>
     zip_safe=False
   File "/usr/local/lib/python2.7/distutils/core.py", line 112, in setup
     _setup_distribution = dist = klass(attrs)
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/setuptools/dist.py",
 line 221, in __init__
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/setuptools/dist.py",
 line 245, in fetch_build_eggs
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/pkg_resources.py",
 line 586, in resolve
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/pkg_resources.py",
 line 831, in best_match
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/pkg_resources.py",
 line 843, in obtain
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/setuptools/dist.py",
 line 295, in fetch_build_egg
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/setuptools/command/easy_install.py",
 line 592, in easy_install
 distutils.errors.DistutilsError: Could not find suitable distribution
 for Requirement.parse('stsci.distutils>=0.3')
 *** Error code 1

 Stop.
 make: stopped in /a/ports/astro/py-pyfits
 ================================================================
 build of /usr/ports/astro/py-pyfits ended at Tue Aug  6 07:46:49 UTC 2013

 --001a11c2cbdef7139304e342c3ac
 Content-Type: text/html; charset=UTF-8
 Content-Transfer-Encoding: quoted-printable

 <div dir=3D"ltr">Hi,<div><br></div><div>=C2=A0 =C2=A0The build failed on my=
  box, the build log is as below, would you have a look of it ?</div><div><b=
 r></div><div>=C2=A0 Thanks !</div><div><br></div><div>wen</div><div><br></d=
 iv><div><pre style=3D"color:rgb(0,0,0);word-wrap:break-word;white-space:pre=
 -wrap">
 building py27-pyfits-3.1.2 in directory /usr/local/tinderbox/10.0-head
 build started at Tue Aug  6 07:45:41 UTC 2013
 port directory: /usr/ports/astro/py-pyfits
 building for:  10.0-CURRENT amd64
 maintained by: <a href=3D"mailto:tonymaher at optusnet.com.au">tonymaher at optus=
 net.com.au</a>
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 RUN_DEPENDS=3Dlapack-3.4.2.txz blas-3.4.2.txz suitesparse-4.0.2_1.txz py27-=
 nose-1.3.0.txz python27-2.7.5_1.txz gcc-4.6.3.txz py27-distribute-0.6.35.tx=
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 TEST_DEPENDS=3D
 add_pkg pkg-1.1.4_1.txz
 adding dependencies
 pkg_add pkg-1.1.4_1.txz
 The package management tool is not yet installed on your system.
 Do you want to fetch and install it now? [y/N]: Installing pkg-1.1.4_1... d=
 one
 If you are upgrading from the old package format, first run:

   # pkg2ng
 add_pkg
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D<phase 1: ma=
 ke checksum>=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 =3D=3D=3D>   py27-pyfits-3.1.2 depends on file: /usr/local/sbin/pkg - fo=
 und
 =3D> pyfits-3.1.2.tar.gz doesn't seem to exist in /tmp/distfiles/.
 =3D> Attempting to fetch file:///distcache//pyfits-3.1.2.tar.gz
 pyfits-3.1.2.tar.gz                                      0  B    0  Bps
 =3D=3D=3D> Fetching all distfiles required by py27-pyfits-3.1.2 for buil=
 ding
 =3D> SHA256 Checksum OK for pyfits-3.1.2.tar.gz.
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D<phase 2: ma=
 ke extract>=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 add_pkg
 =3D=3D=3D>   py27-pyfits-3.1.2 depends on file: /usr/local/sbin/pkg - fo=
 und
 =3D=3D=3D> Fetching all distfiles required by py27-pyfits-3.1.2 for buil=
 ding
 =3D=3D=3D>  Extracting for py27-pyfits-3.1.2
 =3D> SHA256 Checksum OK for pyfits-3.1.2.tar.gz.
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D<phase 3: ma=
 ke patch>=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 add_pkg
 =3D=3D=3D>  Patching for py27-pyfits-3.1.2
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D<phase 4: ma=
 ke build>=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 add_pkg lapack-3.4.2.txz blas-3.4.2.txz suitesparse-4.0.2_1.txz py27-nose-1=
 .3.0.txz python27-2.7.5_1.txz gcc-4.6.3.txz py27-distribute-0.6.35.txz gett=
 ext-0.18.3.txz gmp-5.1.2.txz mpfr-3.1.2.txz mpc-0.9.txz libiconv-1.14_1.txz=
  binutils-2.23.2.txz gcc-ecj-4.5.txz py27-numpy-1.7.0_1,1.txz py27-d2to1-0.=
 2.10.txz
 adding dependencies
 pkg_add lapack-3.4.2.txz
 Installing lapack-3.4.2...Installing mpfr-3.1.2...Installing gmp-5.1.2... d=
 one
  done
 Installing mpc-0.9... done
 Installing blas-3.4.2...Installing gcc-ecj-4.5... done
 Installing gcc-4.6.3...Installing gettext-0.18.3...Installing libiconv-1.14=
 _1... done
  done
 Installing binutils-2.23.2... done
  done
  done
  done
 pkg_add blas-3.4.2.txz
 skipping blas-3.4.2, already added
 pkg_add suitesparse-4.0.2_1.txz
 Installing suitesparse-4.0.2_1... done
 pkg_add py27-nose-1.3.0.txz
 Installing py27-nose-1.3.0...Installing python27-2.7.5_1... done
 Installing py27-distribute-0.6.35... done
 215
 238
  done
 =3D=3D=3D=3D
 Note that some of the standard modules are provided as separate
 ports since they require extra dependencies:

 bsddb           databases/py-bsddb
 gdbm            databases/py-gdbm
 sqlite3         databases/py-sqlite3
 tkinter         x11-toolkits/py-tkinter

 Install them as needed.
 =3D=3D=3D=3D
 pkg_add python27-2.7.5_1.txz
 skipping python27-2.7.5_1, already added
 pkg_add gcc-4.6.3.txz
 skipping gcc-4.6.3, already added
 pkg_add py27-distribute-0.6.35.txz
 skipping py27-distribute-0.6.35, already added
 pkg_add gettext-0.18.3.txz
 skipping gettext-0.18.3, already added
 pkg_add gmp-5.1.2.txz
 skipping gmp-5.1.2, already added
 pkg_add mpfr-3.1.2.txz
 skipping mpfr-3.1.2, already added
 pkg_add mpc-0.9.txz
 skipping mpc-0.9, already added
 pkg_add libiconv-1.14_1.txz
 skipping libiconv-1.14_1, already added
 pkg_add binutils-2.23.2.txz
 skipping binutils-2.23.2, already added
 pkg_add gcc-ecj-4.5.txz
 skipping gcc-ecj-4.5, already added
 pkg_add py27-numpy-1.7.0_1,1.txz
 Installing py27-numpy-1.7.0_1,1... done
 pkg_add py27-d2to1-0.2.10.txz
 Installing py27-d2to1-0.2.10...238
 263
  done
 =3D=3D=3D>   py27-pyfits-3.1.2 depends on file: /usr/local/lib/python2.7=
 /site-packages/numpy/core/numeric.py - found
 =3D=3D=3D>   py27-pyfits-3.1.2 depends on package: py27-d2to1>=3D0 - =
 found
 =3D=3D=3D>   py27-pyfits-3.1.2 depends on file: /usr/local/bin/easy_inst=
 all-2.7 - found
 =3D=3D=3D>   py27-pyfits-3.1.2 depends on file: /usr/local/bin/python2.7=
  - found
 =3D=3D=3D>  Configuring for py27-pyfits-3.1.2
 Download error on <a href=3D"http://pypi.python.org/simple/stsci.distutils/=
 ">http://pypi.python.org/simple/stsci.distutils/</a>: [Errno 8] hostname no=
 r servname provided, or not known -- Some packages may not be found!
 Download error on <a href=3D"http://pypi.python.org/simple/stsci.distutils/=
 ">http://pypi.python.org/simple/stsci.distutils/</a>: [Errno 8] hostname no=
 r servname provided, or not known -- Some packages may not be found!
 Couldn't find index page for 'stsci.distutils' (maybe misspelle=
 d?)
 Download error on <a href=3D"http://pypi.python.org/simple/">http://pypi.py=
 thon.org/simple/</a>: [Errno 8] hostname nor servname provided, or not know=
 n -- Some packages may not be found!
 No local packages or download links found for stsci.distutils>=3D0.3
 Traceback (most recent call last):
   File "setup.py", line 15, in <module>
     zip_safe=3DFalse
   File "/usr/local/lib/python2.7/distutils/core.py", line 112, in=
  setup
     _setup_distribution =3D dist =3D klass(attrs)
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/setuptools/dist.py&=
 quot;, line 221, in __init__
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/setuptools/dist.py&=
 quot;, line 245, in fetch_build_eggs
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/pkg_resources.py&qu=
 ot;, line 586, in resolve
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/pkg_resources.py&qu=
 ot;, line 831, in best_match
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/pkg_resources.py&qu=
 ot;, line 843, in obtain
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/setuptools/dist.py&=
 quot;, line 295, in fetch_build_egg
   File "build/bdist.freebsd-10.0-CURRENT-amd64/egg/setuptools/command/=
 easy_install.py", line 592, in easy_install
 distutils.errors.DistutilsError: Could not find suitable distribution for R=
 equirement.parse('stsci.distutils>=3D0.3')
 *** Error code 1

 Stop.
 make: stopped in /a/ports/astro/py-pyfits
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
 build of /usr/ports/astro/py-pyfits ended at Tue Aug  6 07:46:49 UTC 2013</=
 pre></div></div>

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