pkgdb: biology/p5-Bio-Das failed

j snod freebsd at thesnodgrass.com
Tue Oct 18 21:40:45 PDT 2005


I'm getting the following error when running pkg_db.  I have just 
cvsupped ports-all.  This is on an i686, I'll post more system info below:

root at oso: [/var/db] pkgdb -F
--->  Checking the package registry database
[Updating the pkgdb <format:bdb1_btree> in /var/db/pkg ... - 31 packages 
found (-27 +7) (...)....... done]
Stale dependency: autoconf-2.13.000227_5 -> perl-5.6.1_15 (lang/perl5):
Updating the ports index ... Generating INDEX.tmp - please 
wait.."Makefile", line 76: warning: String comparison operator should be 
either == or !=
"Makefile", line 76: Malformed conditional ((${PERL_LEVEL} < 500601))
"Makefile", line 76: Missing dependency operator
"Makefile", line 78: if-less endif
"Makefile", line 78: Need an operator
make: fatal errors encountered -- cannot continue
===> biology/p5-Bio-Das failed
*** Error code 1
1 error

********************************************************************
Before reporting this error, verify that you are running a supported
version of FreeBSD (see http://www.FreeBSD.org/ports/) and that you
have a complete and up-to-date ports collection.  (INDEX builds are
not supported with partial or out-of-date ports collections -- in
particular, if you are using cvsup, you must cvsup the "ports-all"
collection, and have no "refuse" files.)  If that is the case, then
report the failure to ports at FreeBSD.org together with relevant
details of your ports configuration (including FreeBSD version,
your architecture, your environment, and your /etc/make.conf
settings, especially compiler flags and WITH/WITHOUT settings).

Note: the latest pre-generated version of INDEX may be fetched
automatically with "make fetchindex".
********************************************************************

*** Error code 1

Stop in /usr/ports.
*** Error code 1

Stop in /usr/ports.
failed to generate INDEX!
index generation error
database file error






My pkg_info is:

autoconf-2.13.000227_5 Automatically configure source code on many Un*x 
platforms
automake-1.4.6_1    GNU Standards-compliant Makefile generator (legacy 
version
bash-2.05b.007_2    The GNU Bourne Again Shell
bison-1.75_2        A parser generator from FSF, (mostly) compatible 
with Yacc
cvsup-without-gui-16.1h General network file distribution system 
optimized for CVS
expat-1.95.8        XML 1.0 parser written in C
fastest_cvsup-0.2.8 Finds fastest CVSup server
fontconfig-2.2.3,1  An XML-based font configuration API for X Windows
freetype2-2.1.7_3   A free and portable TrueType font rendering engine
gettext-0.13.1_1    GNU gettext package
gmake-3.80_2        GNU version of 'make' utility
javavmwrapper-1.5   Wrapper script for various Java Virtual Machines
jbigkit-1.6         Lossless compression for bi-level images such as 
scanned pa
jpeg-6b_3           IJG's jpeg compression utilities
libiconv-1.8_2      A character set conversion library
libtool-1.3.5_2     Generic shared library support script (version 1.3)
libtool-1.5.8       Generic shared library support script (version 1.5)
lynx-2.8.4.1c       A non-graphical, text-based World-Wide Web client
m4-1.4.1            GNU m4
mutt-1.4.2.1_1      The Mongrel of Mail User Agents (part Elm, Pine, 
Mush, mh,
netpbm-10.24        A toolkit for conversion of images between different 
format
nspr-4.4.1_1        A platform-neutral API for system level and libc 
like funct
perl-5.8.5          Practical Extraction and Report Language
pkgconfig-0.15.0_1  A utility used to retrieve information about 
installed libr
png-1.2.6           Library for manipulating PNG images
portupgrade-20040701_3 FreeBSD ports/packages administration and 
management tool s
ruby-1.8.2.p2_1     An object-oriented interpreted scripting language
ruby18-bdb1-0.2.2   Ruby interface to Berkeley DB revision 1.8x with 
full featu
tiff-3.6.1_3        Tools and library routines for working with TIFF images
unzip-5.51          List, test and extract compressed files in a ZIP archive
zip-2.3_1           Create/update ZIP files compatible with pkzip



Running this:
FreeBSD oso.bajabound.com 5.1-RELEASE FreeBSD 5.1-RELEASE #0: Thu Jun  5 
02:55:42 GMT 2003 
root at wv1u.btc.adaptec.com:/usr/obj/usr/src/sys/GENERIC  i386


I have the following in my /etc/make.conf:
CPUTYPE=		i686
CFLAGS= 		-O2 –pipe –funroll-loops
COPTFLAGS= 		-O2 –pipe –funroll-loops
SUP_UPDATE=	yes
SUP=			/usr/local/bin/cvsup
SUPFLAGS=		-g –L 2
SUPHOST=		cvsup4.freebsd.org
SUPFILE=		/usr/share/examples/cvsup/stable-supfile
PORTSSUPFILE=	/usr/share/examples/cvsup/ports-supfile




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