[Bug 228758] biology/tRNAscan-SE: update to 1.3.1

[bugzilla-noreply at freebsd.org]

https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=228758

Motomichi Matsuzaki <mzaki at niid.go.jp> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
 Attachment #194016|0                           |1
        is obsolete|                            |

--- Comment #3 from Motomichi Matsuzaki <mzaki at niid.go.jp> ---
Created attachment 194046
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=194046&action=edit
svn diff (to 2.0.0)

(In reply to Kirill Ponomarev from comment #2)

Here you are!

Changes:
* updating to 2.0.0 (without bumping PORTEPOCH)
* taking over MAINTAINER
* new COMMENT
* add RUN_DEPENDS on upcoming biology/infernal (bug #228776)

This version uses autotools, so patches/knobs are rewritten from scratch.

The original Makefile installs some files to strange places,
so the location is modified to fit with FreeBSD hier(7) as follows:
* configuration file: $(bindir) to $(sysconfdir)
* header files: $(includedir) to not installed since unnecessary
* static data files: $(libdir) to $(pkgdatadir)
* perl modules: $(libdir) to $(pkgdatadir)

Tested by: poudriere testport (amd64/i386 11.1)

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