[Bug 225682] [maintainer-update] biology/seqan and biology/seqan-apps

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=225682

            Bug ID: 225682
           Summary: [maintainer-update] biology/seqan and
                    biology/seqan-apps
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Some People
          Priority: ---
         Component: Individual Port(s)
          Assignee: freebsd-ports-bugs at FreeBSD.org
          Reporter: h2+fbsdports at fsfe.org

Created attachment 190337
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=190337&action=edit
update for biology/seqan

* update both ports to 2.4.0
* add OPTIMIZED_CFLAGS option to biology/seqan-apps
* move a section of the biology/seqan-apps/Makefile  around to satisfy portlint
* remove BROKEN_* from biology/seqan-apps/Makefile because upstream now claims
support for these architectures

biology/seqan:

root at celegans /usr/ports/biology/seqan # portlint
looks fine.
root at celegans /usr/ports/biology/seqan # make check-plist
====> Checking for pkg-plist issues (check-plist)
===> Parsing plist
===> Checking for items in STAGEDIR missing from pkg-plist
===> Checking for items in pkg-plist which are not in STAGEDIR
===> No pkg-plist issues found (check-plist)
root at celegans /usr/ports/biology/seqan # make stage-qa
====> Running Q/A tests (stage-qa)
/!\ To run stage-qa automatically add DEVELOPER=yes to your environment /!\


biology/seqan-apps:

root at celegans /usr/ports/biology/seqan-apps # portlint
looks fine.
root at celegans /usr/ports/biology/seqan-apps # make check-plist
====> Checking for pkg-plist issues (check-plist)
===> Parsing plist
===> Checking for items in STAGEDIR missing from pkg-plist
===> Checking for items in pkg-plist which are not in STAGEDIR
===> No pkg-plist issues found (check-plist)
root at celegans /usr/ports/biology/seqan-apps # make stage-qa
====> Running Q/A tests (stage-qa)
/!\ To run stage-qa automatically add DEVELOPER=yes to your environment /!\
root at celegans /usr/ports/biology/seqan-apps #

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