[Bug 223094] biology/htslib biology/samtools biology/bcftools: update to 1.6
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Wed Oct 18 14:03:45 UTC 2017
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=223094
Bug ID: 223094
Summary: biology/htslib biology/samtools biology/bcftools:
update to 1.6
Product: Ports & Packages
Version: Latest
Hardware: Any
OS: Any
Status: New
Severity: Affects Some People
Priority: ---
Component: Individual Port(s)
Assignee: freebsd-ports-bugs at FreeBSD.org
Reporter: mzaki at niid.go.jp
CC: cartwright at asu.edu
Flags: maintainer-feedback?(cartwright at asu.edu)
CC: cartwright at asu.edu
Update the following ports to 1.6
biology/htslib
biology/samtools
biology/bcftools
common changes:
* using predefined BSD_INSTALL_* macros in ${WRKSRC}/Makefile rather than
providing INSTALL_* macros via MAKE_ENV in Makefile
* @PORTVERSION@ substitution is no longer required for htslib&samtools
* to adjust shebangs in python scripts (for samtools&bcftools)
changes to htslib:
* to respect ${PREFIX} in ${WRKSRC}/Makefile
changes to bcftools:
* @PORTVERSION@ substitution is now required
All ports passed make test & poudriere testport in my environment (10.3 amd64).
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