[Bug 223094] biology/htslib biology/samtools biology/bcftools: update to 1.6

bugzilla-noreply at freebsd.org bugzilla-noreply at freebsd.org
Wed Oct 18 14:03:45 UTC 2017


https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=223094

            Bug ID: 223094
           Summary: biology/htslib biology/samtools biology/bcftools:
                    update to 1.6
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Some People
          Priority: ---
         Component: Individual Port(s)
          Assignee: freebsd-ports-bugs at FreeBSD.org
          Reporter: mzaki at niid.go.jp
                CC: cartwright at asu.edu
             Flags: maintainer-feedback?(cartwright at asu.edu)
                CC: cartwright at asu.edu

Update the following ports to 1.6

biology/htslib
biology/samtools
biology/bcftools

common changes:
* using predefined BSD_INSTALL_* macros in ${WRKSRC}/Makefile rather than
providing INSTALL_* macros via MAKE_ENV in Makefile
* @PORTVERSION@ substitution is no longer required for htslib&samtools
* to adjust shebangs in python scripts (for samtools&bcftools)

changes to htslib:
* to respect ${PREFIX} in ${WRKSRC}/Makefile

changes to bcftools:
* @PORTVERSION@ substitution is now required

All ports passed make test & poudriere testport in my environment (10.3 amd64).

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