[Bug 207993] [NEW PORT] biology/p5-transdecoder: Identify candidate coding regions within transcript sequences

bugzilla-noreply at freebsd.org bugzilla-noreply at freebsd.org
Mon Mar 14 18:47:23 UTC 2016


https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=207993

            Bug ID: 207993
           Summary: [NEW PORT] biology/p5-transdecoder: Identify candidate
                    coding regions within transcript sequences
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Some People
          Priority: ---
         Component: Individual Port(s)
          Assignee: freebsd-ports-bugs at FreeBSD.org
          Reporter: bacon4000 at gmail.com

TransDecoder identifies candidate coding regions within transcript sequences,
such as those generated by de novo RNA-Seq transcript assembly using Trinity,
or constructed based on RNA-Seq alignments to the genome using Tophat and
Cufflinks.

WWW: http://transdecoder.github.io/

Dependency for upcoming Trinity genomics pipeline.

portlint: OK (looks fine.)
testport: OK (poudriere: {10.1,9.3}-RELEASE {amd64,i386})

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