[Bug 211393] math/R: update patches and options

bugzilla-noreply at freebsd.org bugzilla-noreply at freebsd.org
Thu Aug 4 04:36:52 UTC 2016


https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=211393

Joseph Mingrone <jrm at ftfl.ca> changed:

           What    |Removed                     |Added
----------------------------------------------------------------------------
 Attachment #173182|0                           |1
        is obsolete|                            |
 Attachment #173265|                            |maintainer-approval+
              Flags|                            |

--- Comment #10 from Joseph Mingrone <jrm at ftfl.ca> ---
Created attachment 173265
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=173265&action=edit
svn diff #4: redo diff after other commits to math/R

There were other commits to math/R, so redo this patch.

I've also attempted to reduce disruption with these changes, but still permit
clang to build on 10+ by updating compiler.mk with

# Compiler settings required for R and the R-cran ports.
.if ${OPSYS} == FreeBSD
.if ${OSVERSION} < 1000015
USE_GCC=    yes
.endif
.endif

I tested all ports that have USES= cran:compiles and they all built
successfully, so I think this patch is ready unless anyone (wen@? tota@?) has
issues.

Thanks to rhurlin at gwdg.de for testing.

Build logs using default options:

math/R

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_01h23m39s/logs/R-3.3.1_2.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_01h23m40s/logs/R-3.3.1_2.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_01h23m42s/logs/R-3.3.1_2.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_01h23m44s/logs/R-3.3.1_2.log

Build logs for ports with USES=cran:compiles

math/R-cran-lme4

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-03_23h08m45s/logs/R-cran-lme4-1.1.12.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-03_23h08m53s/logs/R-cran-lme4-1.1.12.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h08m59s/logs/R-cran-lme4-1.1.12.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h09m05s/logs/R-cran-lme4-1.1.12.log

math/R-cran-memisc

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-03_23h23m28s/logs/R-cran-memisc-0.99.7.1.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-03_23h23m37s/logs/R-cran-memisc-0.99.7.1.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h23m42s/logs/R-cran-memisc-0.99.7.1.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h23m47s/logs/R-cran-memisc-0.99.7.1.log

math/R-cran-spdep

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-03_23h27m19s/logs/R-cran-spdep-0.6.6.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-03_23h27m25s/logs/R-cran-spdep-0.6.6.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h27m31s/logs/R-cran-spdep-0.6.6.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h27m36s/logs/R-cran-spdep-0.6.6.log

math/R-cran-MCMCpack

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-03_23h37m50s/logs/R-cran-MCMCpack-1.3.6.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-03_23h37m55s/logs/R-cran-MCMCpack-1.3.6.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h37m59s/logs/R-cran-MCMCpack-1.3.6.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h38m05s/logs/R-cran-MCMCpack-1.3.6.log

math/R-cran-influenceR

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h18m40s/logs/R-cran-influenceR-0.1.0.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h18m44s/logs/R-cran-influenceR-0.1.0.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-03_23h46m17s/logs/R-cran-influenceR-0.1.0.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-03_23h46m23s/logs/R-cran-influenceR-0.1.0.log

math/R-cran-mcmc

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h27m07s/logs/R-cran-mcmc-0.9.4.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h27m14s/logs/R-cran-mcmc-0.9.4.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h27m19s/logs/R-cran-mcmc-0.9.4.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h27m23s/logs/R-cran-mcmc-0.9.4.log

math/R-cran-RcppArmadillo

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h31m05s/logs/R-cran-RcppArmadillo-0.7.200.2.0.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h31m11s/logs/R-cran-RcppArmadillo-0.7.200.2.0.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h31m16s/logs/R-cran-RcppArmadillo-0.7.200.2.0.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h31m22s/logs/R-cran-RcppArmadillo-0.7.200.2.0.log

science/R-cran-som

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h34m46s/logs/R-cran-som-0.3.5.1.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h34m54s/logs/R-cran-som-0.3.5.1.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h35m00s/logs/R-cran-som-0.3.5.1.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h35m05s/logs/R-cran-som-0.3.5.1.log

textproc/R-cran-xml2

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h37m07s/logs/R-cran-xml2-1.0.0.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h37m12s/logs/R-cran-xml2-1.0.0.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h37m17s/logs/R-cran-xml2-1.0.0.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h37m23s/logs/R-cran-xml2-1.0.0.log

ftp/R-cran-curl

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h42m08s/logs/R-cran-curl-1.1.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h42m12s/logs/R-cran-curl-1.1.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h42m17s/logs/R-cran-curl-1.1.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h42m23s/logs/R-cran-curl-1.1.log

misc/R-cran-mime

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h44m18s/logs/R-cran-mime-0.5.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h44m24s/logs/R-cran-mime-0.5.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h44m28s/logs/R-cran-mime-0.5.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h44m33s/logs/R-cran-mime-0.5.log

devel/R-cran-Rcpp

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h48m46s/logs/R-cran-Rcpp-0.12.6.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h48m50s/logs/R-cran-Rcpp-0.12.6.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h48m53s/logs/R-cran-Rcpp-0.12.6.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h48m58s/logs/R-cran-Rcpp-0.12.6.log

devel/R-cran-tibble

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h51m42s/logs/R-cran-tibble-1.1.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h51m47s/logs/R-cran-tibble-1.1.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h51m51s/logs/R-cran-tibble-1.1.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h51m59s/logs/R-cran-tibble-1.1.log

finance/R-cran-tseries

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_00h57m37s/logs/R-cran-tseries-0.10.35_1.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_00h57m41s/logs/R-cran-tseries-0.10.35_1.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_00h57m45s/logs/R-cran-tseries-0.10.35_1.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_00h57m51s/logs/R-cran-tseries-0.10.35_1.log

converters/R-cran-jsonlite

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_01h01m52s/logs/R-cran-jsonlite-1.0.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_01h01m56s/logs/R-cran-jsonlite-1.0.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_01h02m01s/logs/R-cran-jsonlite-1.0.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_01h02m06s/logs/R-cran-jsonlite-1.0.log

converters/R-cran-base64enc

http://pkg.awarnach.mathstat.dal.ca/data/9i386-default/2016-08-04_01h05m34s/logs/R-cran-base64enc-0.1.3.log
http://pkg.awarnach.mathstat.dal.ca/data/9amd64-default/2016-08-04_01h05m38s/logs/R-cran-base64enc-0.1.3.log
http://pkg.awarnach.mathstat.dal.ca/data/10i386-default/2016-08-04_01h05m42s/logs/R-cran-base64enc-0.1.3.log
http://pkg.awarnach.mathstat.dal.ca/data/10amd64-default/2016-08-04_01h05m47s/logs/R-cran-base64enc-0.1.3.log

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