[Bug 192744] New: [stage][patch] math/atlas: STAGEify, fix tmpfile leak during build

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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=192744

            Bug ID: 192744
           Summary: [stage][patch] math/atlas: STAGEify, fix tmpfile leak
                    during build
           Product: Ports Tree
           Version: Latest
          Hardware: Any
                OS: Any
            Status: Needs Triage
          Severity: Affects Only Me
          Priority: ---
         Component: Individual Port(s)
          Assignee: freebsd-ports-bugs at FreeBSD.org
          Reporter: truckman at FreeBSD.org

Created attachment 145927
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=145927&action=edit
add stage support to math/atlas and misc other fixes

Add stage support to math/atlas.

Add a patch that prevents leaking files in /var/tmp during build.

Add all the include files to the static pkg-plist and remove the Makefile code
that did this on the fly.

When installing the shared libraries, use INSTALL_LIB instead of INSTALL_DATA.

Fix a portlint warning about IGNORE.

With these change, it is possible to get a clean build (other than a few
portlint warnings) in poudriere if MANUAL_PACKAGE_BUILD is commented out.

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