ports/154053: [Update]math/jags:update to 2.2.0

[Wen Heping]

>Number:         154053
>Category:       ports
>Synopsis:       [Update]math/jags:update to 2.2.0
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          update
>Submitter-Id:   current-users
>Arrival-Date:   Sun Jan 16 08:40:07 UTC 2011
>Closed-Date:
>Last-Modified:
>Originator:     Wen Heping
>Release:        FreeBSD 9.0
>Organization:
FreeBSD
>Environment:
>Description:
Update to 2.2.0
>How-To-Repeat:

>Fix:


Patch attached with submission follows:

diff -urN jags.orig/Makefile jags/Makefile
--- jags.orig/Makefile	2011-01-16 15:44:30.000000000 +0800
+++ jags/Makefile	2011-01-16 16:01:51.000000000 +0800
@@ -7,12 +7,12 @@
 #
 
 PORTNAME=	mcmc-jags
-PORTVERSION=	2.1.0
+PORTVERSION=	2.2.0
 CATEGORIES=	math
 MASTER_SITES=	SF:1,2,3
 MASTER_SITE_SUBDIR=	${PORTNAME}/JAGS/2.x/Source/:1 \
-		${PORTNAME}/Examples/2.0/:2 \
-		${PORTNAME}/Manuals/2.0/:3
+		${PORTNAME}/Examples/2.x/:2 \
+		${PORTNAME}/Manuals/2.x/:3
 DISTFILES=	${DISTNAME:S/mcmc-//:U}${EXTRACT_SUFX}:1
 .if !defined(NOPORTDOCS)
 DISTFILES+=	classic-bugs.tar.gz:2 jags_developer_manual.pdf:3 \
@@ -37,6 +37,8 @@
 USE_BISON=	build
 PLIST_SUB=	PORTVERSION=${PORTVERSION}
 
+MAN1=		jags.1
+
 .include <bsd.port.options.mk>
 
 .if defined(WITH_ATLAS)
diff -urN jags.orig/distinfo jags/distinfo
--- jags.orig/distinfo	2011-01-16 15:44:30.000000000 +0800
+++ jags/distinfo	2011-01-16 15:46:26.000000000 +0800
@@ -1,15 +1,10 @@
-MD5 (mcmc-jags/JAGS-2.1.0.tar.gz) = ddb5eb745cb48537517aba186d7030c8
-SHA256 (mcmc-jags/JAGS-2.1.0.tar.gz) = c713a7f1856f2153a94e96bdf26d1e2dff4e3dc9156864d6798d6b3b157d6e68
-SIZE (mcmc-jags/JAGS-2.1.0.tar.gz) = 1171371
-MD5 (mcmc-jags/classic-bugs.tar.gz) = 98d32deaaf134ade265c0a6146291796
-SHA256 (mcmc-jags/classic-bugs.tar.gz) = 3e4902c08c7823a948fba4d7dc32f5140e56c59f170b12e63ac7f4ffc4a7f8cc
-SIZE (mcmc-jags/classic-bugs.tar.gz) = 81313
-MD5 (mcmc-jags/jags_developer_manual.pdf) = 850864bef54ff17858f8bf341b0c13c1
-SHA256 (mcmc-jags/jags_developer_manual.pdf) = 09d06b202adcbc9a52bd889c19c741ffb13f68b6657b9a0a999ad3f89259eb19
-SIZE (mcmc-jags/jags_developer_manual.pdf) = 71199
-MD5 (mcmc-jags/jags_installation_manual.pdf) = 42a78397a85100d2cfbde4c92aad3b9f
-SHA256 (mcmc-jags/jags_installation_manual.pdf) = d7147c7a57a1e55305c48bcbefbffd19090e958cc55339160c46401fa1d5955a
-SIZE (mcmc-jags/jags_installation_manual.pdf) = 119855
-MD5 (mcmc-jags/jags_user_manual.pdf) = efe47f0332544809627f57c209ca2068
-SHA256 (mcmc-jags/jags_user_manual.pdf) = 39f642e407a03c2e335adef5fca6af09ae5f9af312274dbb535b652c183b1aff
-SIZE (mcmc-jags/jags_user_manual.pdf) = 221001
+SHA256 (mcmc-jags/JAGS-2.2.0.tar.gz) = 6615207cc19463c6398a8c5d02bfc0e3a659928d7da928396f95a63409addd04
+SIZE (mcmc-jags/JAGS-2.2.0.tar.gz) = 1621102
+SHA256 (mcmc-jags/classic-bugs.tar.gz) = ae6f9e25f00a3c2bf2d67c8b3fe040f937551ef75407ae0bd8cad5cbc3a8f768
+SIZE (mcmc-jags/classic-bugs.tar.gz) = 81419
+SHA256 (mcmc-jags/jags_developer_manual.pdf) = 6e7c707b94ffc931807198cc162e8b254859bb774695ae39ef1c1c175560259b
+SIZE (mcmc-jags/jags_developer_manual.pdf) = 71319
+SHA256 (mcmc-jags/jags_installation_manual.pdf) = abce36d30b47da443714b08eaec537a97ca5196f2dd5c6ce3816e5b1035125dc
+SIZE (mcmc-jags/jags_installation_manual.pdf) = 118975
+SHA256 (mcmc-jags/jags_user_manual.pdf) = 77d4c2c7160596c34a5d3cec307d66efc44825e965ab43b83ef59fa349999964
+SIZE (mcmc-jags/jags_user_manual.pdf) = 223214
diff -urN jags.orig/pkg-plist jags/pkg-plist
--- jags.orig/pkg-plist	2011-01-16 15:44:30.000000000 +0800
+++ jags/pkg-plist	2011-01-16 16:01:31.000000000 +0800
@@ -15,11 +15,7 @@
 include/JAGS/distribution/DistPtr.h
 include/JAGS/distribution/DistTab.h
 include/JAGS/distribution/Distribution.h
-include/JAGS/distribution/RNG.h
-include/JAGS/distribution/RNGFactory.h
-include/JAGS/distribution/RmathRNG.h
 include/JAGS/distribution/ScalarDist.h
-include/JAGS/distribution/TruncatedNormal.h
 include/JAGS/distribution/VectorDist.h
 include/JAGS/function/ArrayFunction.h
 include/JAGS/function/FuncTab.h
@@ -54,6 +50,10 @@
 include/JAGS/model/MonitorInfo.h
 include/JAGS/model/NodeArray.h
 include/JAGS/model/SymTab.h
+include/JAGS/rng/RNG.h
+include/JAGS/rng/RmathRNG.h
+include/JAGS/rng/RNGFactory.h
+include/JAGS/rng/TruncatedNormal.h
 include/JAGS/sampler/GraphView.h
 include/JAGS/sampler/Linear.h
 include/JAGS/sampler/Metropolis.h
@@ -462,6 +462,7 @@
 @dirrm include/JAGS/util
 @dirrm include/JAGS/sarray
 @dirrm include/JAGS/sampler
+ at dirrm include/JAGS/rng
 @dirrm include/JAGS/model
 @dirrm include/JAGS/graph
 @dirrm include/JAGS/function


>Release-Note:
>Audit-Trail:
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