ports/150994: Suitesparse can not compile with atlas

[ohata]

>Number:         150994
>Category:       ports
>Synopsis:       Suitesparse can not compile with atlas
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          sw-bug
>Submitter-Id:   current-users
>Arrival-Date:   Mon Sep 27 13:40:04 UTC 2010
>Closed-Date:
>Last-Modified:
>Originator:     ohata
>Release:        8-stable
>Organization:
Mitsubishi
>Environment:
FreeBSD yyy.co.jp 8.1-STABLE FreeBSD 8.1-STABLE #8: Fri Sep 24 14:05:33 JST 2010     root at yyy.co.jp:/usr/obj/usr/src/sys/GX260.8  i386
>Description:
SuiteSparse can not compile with atlas under gcc45.

hostname:/usr/ports/math/suitesparse# make
===>  License check disabled, port has not defined LICENSE
===>  Extracting for suitesparse-3.4.0_1
=> MD5 Checksum OK for SuiteSparse-3.4.0.tar.gz.
=> SHA256 Checksum OK for SuiteSparse-3.4.0.tar.gz.
===>  Patching for suitesparse-3.4.0_1
===>  Applying FreeBSD patches for suitesparse-3.4.0_1
/bin/cp -r /usr/ports/math/suitesparse/work/SuiteSparse /usr/ports/math/suitesparse/work/SuiteSparse_shared
===>   suitesparse-3.4.0_1 depends on executable: gmake - found
===>   suitesparse-3.4.0_1 depends on executable: gcc45 - found
===>   suitesparse-3.4.0_1 depends on shared library: atlas - found
===>  Configuring for suitesparse-3.4.0_1
===>  Building for suitesparse-3.4.0_1
cd /usr/ports/math/suitesparse/work/SuiteSparse ; gmake
( cd UFconfig/xerbla ; gmake )
gmake[1]: Entering directory `/usr/ports/math/suitesparse/work/SuiteSparse/UFconfig/xerbla'
gcc45 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc45 -fno-strict-aliasing -c xerbla.c
ar cr libcerbla.a xerbla.o
rm -f xerbla.o
gmake[1]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/UFconfig/xerbla'
( cd AMD ; gmake )
gmake[1]: Entering directory `/usr/ports/math/suitesparse/work/SuiteSparse/AMD'
( cd Lib    ; gmake )

snip


gmake[4]: Entering directory `/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD/Lib'
gmake[4]: Nothing to be done for `default'.
gmake[4]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD/Lib'

gmake[3]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/CCOLAMD'
gcc45 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc45 -fno-strict-aliasing -DNPARTITION -o cholmod_demo -I../Include -I../../UFconfig cholmod_demo.c ../Lib/libcholmod.a ../../AMD/Lib/libamd.a ../../COLAMD/Lib/libcolamd.a ../../CCOLAMD/Lib/libccolamd.a ../../CAMD/Lib/libcamd.a  -L/usr/local/lib -pthread -lalapack_r -L/usr/local/lib -pthread -lptf77blas -lptcblas -latlas_r -lgfortran -lgfortranbegin  -lm
/usr/local/bin/ld: cholmod_demo: hidden symbol `__powidf2' in /usr/local/lib/gcc45/gcc/i386-portbld-freebsd8.1/4.5.2/libgcc.a(_powidf2.o) is referenced by DSO
/usr/local/bin/ld: final link failed: Nonrepresentable section on output
collect2: ld returned 1 exit status
gmake[2]: *** [cholmod_demo] Error 1
gmake[2]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/CHOLMOD/Demo'
gmake[1]: *** [all] Error 2
gmake[1]: Leaving directory `/usr/ports/math/suitesparse/work/SuiteSparse/CHOLMOD'
gmake: *** [default] Error 2
*** Error code 2

Stop in /usr/ports/math/suitesparse.

>How-To-Repeat:
When Atlas is not installed, it can compile with blas under gcc45.
>Fix:


>Release-Note:
>Audit-Trail:
>Unformatted: