ports/140486: Update port: science/pnetcdf to 1.1.0

[KATO Tsuguru]

>Number:         140486
>Category:       ports
>Synopsis:       Update port: science/pnetcdf to 1.1.0
>Confidential:   no
>Severity:       non-critical
>Priority:       low
>Responsible:    freebsd-ports-bugs
>State:          open
>Quarter:        
>Keywords:       
>Date-Required:
>Class:          change-request
>Submitter-Id:   current-users
>Arrival-Date:   Wed Nov 11 18:10:03 UTC 2009
>Closed-Date:
>Last-Modified:
>Originator:     KATO Tsuguru
>Release:        FreeBSD 7.2-RELEASE-p4 i386
>Organization:
>Environment:
>Description:
- Update to version 1.1.0

>How-To-Repeat:
>Fix:

diff -urN /usr/ports/science/pnetcdf/Makefile science/pnetcdf/Makefile
--- /usr/ports/science/pnetcdf/Makefile	2009-10-29 23:48:13.000000000 +0900
+++ science/pnetcdf/Makefile	2009-11-12 00:47:53.000000000 +0900
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	pnetcdf
-PORTVERSION=	1.0.3
+PORTVERSION=	1.1.0
 CATEGORIES=	science parallel
 MASTER_SITES=	http://ftp.mcs.anl.gov/pub/parallel-netcdf/
 DISTNAME=	parallel-netcdf-${PORTVERSION}
@@ -28,7 +28,8 @@
 MAN3=		pnetcdf.3
 PORTDOCS=	COPYRIGHT INSTALL README
 PLIST_FILES=	bin/ncmpidump bin/ncmpigen bin/ncvalid \
-		include/pnetcdf.h include/pnetcdf.inc lib/libpnetcdf.a
+		include/pnetcdf.h include/pnetcdf.inc include/pnetcdf.mod \
+		lib/libpnetcdf.a
 
 CFLAGS+=	-fPIC -DPIC
 
@@ -44,6 +45,12 @@
 CONFIGURE_ARGS+=--with-mpi=${LOCALBASE}/mpich2
 .endif
 
+post-patch:
+	@${REINPLACE_CMD} -e '/GENERATED/s|$$@|$$(INCDIR)|' \
+		${WRKSRC}/rules.make
+	@${REINPLACE_CMD} -e 's|<malloc\.h>|<stdlib.h>|' \
+		${WRKSRC}/src/libf/mvar.[ch]
+
 post-install:
 .for file in ncmpidump ncmpigen ncvalid
 	@${STRIP_CMD} ${PREFIX}/bin/${file}
diff -urN /usr/ports/science/pnetcdf/distinfo science/pnetcdf/distinfo
--- /usr/ports/science/pnetcdf/distinfo	2009-10-29 23:48:13.000000000 +0900
+++ science/pnetcdf/distinfo	2009-11-04 04:08:17.000000000 +0900
@@ -1,3 +1,3 @@
-MD5 (parallel-netcdf-1.0.3.tar.bz2) = 2b7f43ff29a66b5eb58eb90fdf83d0dd
-SHA256 (parallel-netcdf-1.0.3.tar.bz2) = 25804a81a91a7026068c0db2a7d8390b8b8a479bd2aa0e797c417b7be78f8d6c
-SIZE (parallel-netcdf-1.0.3.tar.bz2) = 3504561
+MD5 (parallel-netcdf-1.1.0.tar.bz2) = 0bfba3d308c441aa4a6f8cc247d871bf
+SHA256 (parallel-netcdf-1.1.0.tar.bz2) = a92b757380d54487fcfa7958fc9f038e93d1fc4e585cc7ce2ac1f1cc29b2fb8d
+SIZE (parallel-netcdf-1.1.0.tar.bz2) = 3601038
diff -urN /usr/ports/science/pnetcdf/pkg-descr science/pnetcdf/pkg-descr
--- /usr/ports/science/pnetcdf/pkg-descr	2007-04-30 22:44:51.000000000 +0900
+++ science/pnetcdf/pkg-descr	2009-11-05 22:25:03.000000000 +0900
@@ -5,4 +5,4 @@
 I/O performance. By making some small changes to the API specified by NetCDF,
 we can use MPI-IO and its collective operations.
 
-WWW: http://trac.mcs.anl.gov/projects/parallel-netcdf
+WWW: http://www.mcs.anl.gov/parallel-netcdf
>Release-Note:
>Audit-Trail:
>Unformatted: